| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4239 |
|---|
| Symbol | |
|---|
| ID | 3932391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007801 |
|---|
| Strand | + |
|---|
| Start bp | 26860 |
|---|
| End bp | 28413 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637902296 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_512179 |
|---|
| Protein GI | 89057725 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0553335 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTCG ACCTGCGTTT CTATCTGCGC CTGTTCATCC GACGACTGCC GGCCATGATG
ACGATCATTA TCGTCTGCTC AGCCATCGGC GTCGTGCTGG CGATGCGCCT GCCGCCGACT
TATTCGACGT CTGCACGACT TTTGATGGAA AGTCCGCAAA TTCCTGACGC ACTGGCCGCT
GCGATCGTCA ATGTATCCCC TGATGAAGAG ATCGAAATCA TCCGTCAGAG GCTGCTGACC
CGGGTCAATC TGCTCAACAT TGCCAATGAA ATGAATGTGT TTGAGAACTA CGCCGCCACG
CCAGCGGACG AGATGGTGCA ACACATGCGT GCGCATACCA GAATCCGCAG CACCGGAGGC
CAGAATCAAC CCACTCTGAT TACGGTTAGC TTCGAGGCAC GCGCGCCCCA GATCGCAGCC
AATGTAGTTA ATGAATATGT CACCCGCATC GTCAGCGCGA ATGTAGAATT GCGCACTGGA
TTGGCTGAAG ACACATTGTC ATTCTTTGAG CAGGAAGTCA GCCGCCTCTC CACAGAATTG
GATCTGCGGA GTGGGTACAT CGCAGAGTTC CAGATAGAAA ATGCCGACGC CCTACCGGAC
GATCAAGCGT TCCGGCTAAA CCGTCAGGCG CTCTTGCAAG AGCGTATCGG GAGTGCCGAA
CGCGAACGTG CAACCCTTCA GGATCAGCGC GCCCGTGTGA TTGCGATTTT TGAGCAAACC
GGTCAAATCA ACTCAGGCAA CCCCGAAACG CTCAGCCCAG AAGAACAGCA ACTGCATGCG
GCTGAAGCGG AGTTGGCCAA CGCGCTTACA ATTTTTTCCG AAACCAACCC TCAAGTGCAA
TTGCTTCAGC GCCAGGTTGA GCGATTGCGC GAACAGATAG CAGCCGGAAT AGAAACAGGT
CAGGAAGAGG GAGAAAACGA CGACGCGCGC TCCAGCACAC GCACCGTTCT GGATCTACAA
CTGACCCAAA TTGACACTCA AATCACCGCA CTCGACACTC TGATCGCCGA GACACAGCAA
GAACTACAGC GGTTGGAGGA TGCCATTTCA CGCACTCCGA GCAATGCGAT CACACTCAGT
AGCCTAGAGC GCAACTACGA AAATATCCGC GATCAGTATG ATCAGGCCGT TGCGCGGTTG
GCCGATGCCA GCACAGGTGA GCGGATTGAA CTGACCTCCC GGGGGCAGCG GATATCCTTG
ATTGAATCTG CCAACGTACC CAGAAGCCCA TCTAGTCCAG ATCGCCCAAT GGTCGCCGCC
ACTGGTGTCG CGTTAGGGAT CGGTTTGGCT GGCGCTCTGT TCTTGTTGCT TGAACTCCTG
AACCGCACCG TGCGACGCCC GGTGGAGATA ACAAATGCGC TTGGCATCCA ACCTCTGGCC
GTAATCCCTT ACCTAGACAC ACAAAGCCTC AGACTAAGAC GTCGATTGAT ACGCTTGATA
TCGCTGATAA TTGTGATTTT GGGCGTACCG GCCGCCCTCT GGGCGATCGA TATGTATTAT
ATGCCTCTTG ACCAATTGGC TGAGCGGGTC CTGAGTCGTC TAGGCGTGGG TTGA
|
|---|
| Protein sequence | MNFDLRFYLR LFIRRLPAMM TIIIVCSAIG VVLAMRLPPT YSTSARLLME SPQIPDALAA
AIVNVSPDEE IEIIRQRLLT RVNLLNIANE MNVFENYAAT PADEMVQHMR AHTRIRSTGG
QNQPTLITVS FEARAPQIAA NVVNEYVTRI VSANVELRTG LAEDTLSFFE QEVSRLSTEL
DLRSGYIAEF QIENADALPD DQAFRLNRQA LLQERIGSAE RERATLQDQR ARVIAIFEQT
GQINSGNPET LSPEEQQLHA AEAELANALT IFSETNPQVQ LLQRQVERLR EQIAAGIETG
QEEGENDDAR SSTRTVLDLQ LTQIDTQITA LDTLIAETQQ ELQRLEDAIS RTPSNAITLS
SLERNYENIR DQYDQAVARL ADASTGERIE LTSRGQRISL IESANVPRSP SSPDRPMVAA
TGVALGIGLA GALFLLLELL NRTVRRPVEI TNALGIQPLA VIPYLDTQSL RLRRRLIRLI
SLIIVILGVP AALWAIDMYY MPLDQLAERV LSRLGVG
|
|---|
| |