| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0934 |
|---|
| Symbol | |
|---|
| ID | 3931368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | + |
|---|
| Start bp | 824862 |
|---|
| End bp | 825506 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637901088 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_506798 |
|---|
| Protein GI | 88608430 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAA AATTGAACAC CAAGGCAAAA GTCACTCCTG AAGCAATATT ATTTGATTGG
GATAACACTA TTGTTGATAC ACGAGTCATG ATCCTAAATG CAGTTAACAA AACGCTGAGT
CACTTTGGCA AACCAGCGCT TGATAGAGAC ATGAATGCAC CGGAAAGAAT GGATTTCTTT
AAACAGACTT TTGGAGAGGA ATGGGTTTTC GCTTATTCGC TATTCACAGA TCACCTTAGA
TCCGAGAACC CGGGACCGCT ACAGATATTT CCAGGATTCA CATCATTTTT GGATTTGATA
GCTGAAAGGC GCATATTTAC GGGTATAGTC AGCAATAAAT ATAACGAACT ACTCAAAAAA
GAGGTCGATT CTCTCGGACT AACGGATCGA TTTGATGTCA TAGTCGGCTC AGGTGATACA
GACCAGGATA AACCTTCAGC AAAACCACTA CTGTACGCTC TATCGATAGG TAACATTACT
CCATCGAAAG AAACTGTTCT TTTTATCGGT GACAGCGCAA CGGACATGGA GTGCGCAAGG
AATGCAACTG TACGTGGTAT TGCATATCGA GCGACTCCAA TAGAAGGCTT TGAGAATATA
CCAATCATAC GGCATTATGA CCAGGCAAAA ATATTAATAC CCTAA
|
|---|
| Protein sequence | MNEKLNTKAK VTPEAILFDW DNTIVDTRVM ILNAVNKTLS HFGKPALDRD MNAPERMDFF
KQTFGEEWVF AYSLFTDHLR SENPGPLQIF PGFTSFLDLI AERRIFTGIV SNKYNELLKK
EVDSLGLTDR FDVIVGSGDT DQDKPSAKPL LYALSIGNIT PSKETVLFIG DSATDMECAR
NATVRGIAYR ATPIEGFENI PIIRHYDQAK ILIP
|
|---|
| |