Gene NSE_0312 details

Gene Information

• Locus tag: NSE_0312
• Symbol: rpoD
• ID: 3931706
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Neorickettsia sennetsu str. Miyayama
• Kingdom: Bacteria
• Replicon accession: NC_007798
• Strand: -
• Start bp: 254613
• End bp: 256475
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637900468
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_506202
• Protein GI: 88608313
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAAAG GTTACAGTTC TAAGTTTCAT CAAGTTGTTA AAGCACTGAT CACTAAAGGA 
GTAAAAAGAG GTTTCGTCAC GTATGGTGAG TTGAGTGACT CATTTTCAGA TGAGGATTTT 
GAAAATTTAA ATTGCATAGA AGAAGCAATA AGCAAACTGG AGGAATCCGG AATAGGTATC 
CTAGAAAAGG ATGAGGAAGA CGAGCTCAGT GAAGAAGTCA AGGAAGAAGA TGAAGAAGAG 
GACGAAGCCG CTGACATATT AGGTCACACG GACGATCCAG TAAGGCTATA TCTTCGTGAA 
ATGAGCTACG TCAAGCTCCT TTCTAGAGAT GATGAAGTAG AAATAGCAAA GGCCATTGTA 
GCAGAAAAAT TTGAGTCGCT TTCCGCGGTT TTACTCTTCC CTTCAGTACT GAAGAGTATA 
GTAAATCTCG GAACAAAACT GAGAGAATGC ACAATCTCGT TGCGTGAAGT AATAGAATCA 
GACTCAGGAT TAAAGAGTGA ACTTACTGAG GAAACAGGCA AAGGAGACGA CCTCTTTGAA 
GGCATGGATG GCAAACCAGA AGAAGGAAAC CAGATGTCTG ACGAGGAGCT TATGGAGAAG 
GTCTTAGATA TCTTTGGTGA GCTCGAAACA ATAATCACAT CCGCGCTCGA TAAAGCGAAA 
GAAGGACAGA TGGTAAAAAT TGTAGATGGC GAGGTGATAC TCGACCCAGA ATATCGAGAA 
CTGCACACTC TTGCAGTAAA CCACTTAAAC CAAGTGAAGC TCAACCCAAA GCTTCTTGCT 
GAGTTTTTCG AGAACACTCG AAAAAAGAAC GAGCTTATTC TCGAAAAGAA AAAGGTACTC 
CTCACATTCT TAGAAGAACA TGGCTTAGAT AGAACGGTCC TCATCAAAGG TAAAGTACAC 
ATCCTGGATG CTGTGGTCCT ATCAGAACTT CTGAAGGAAC ACAATATTTG CGACACACAT 
TTCTCTCTTG AAGAATTTCT CTCTCCAATT AGAGAGCTGG AAAAAAATGA AGGAATGGAC 
TATAGAAGTA TCAGCTTTCT AACCAGAAAG GTTGCTACTC ACCTAGATAA TGCGAATGCA 
GCAAAACATA GAATGGTAGA AGCTAATTTG AGGTTAGTGA TCTCAATTGC TAAGAAGTAC 
ACTAATAGAG GTATGCCATT CCCCGATCTG ATTCAAGAAG GAAATATCGG TCTGATGAAA 
GCAGTAGATA AATTTGATCA TAGAAGGGGG CATAAATTCT CTACATACGC AACTTGGTGG 
TGCAGACAGG CTATAACCCG CGCTATAGCA GATTGTGGAA GCATAGTGAG AAAACCTGTA 
CACATACACG AGACTGCAAA TAAGGTAATG CGGACTAGAA GGAGACTGTA CAACCTCAAT 
GGTAGAGAGC CTACTGTCGA GGAGATTGCA AATCTACTTA AAATTTCTCC GGATAAGGTT 
AAGAAGTCGC TCAAAGTGAA TCAAGATCCG ATAAGTCTGG AATCACCAGT GGGCGATGAC 
AGTAATAGTG GTTCTTTTGG CGACTTTATA GAGGATAAGA ATGCGGTAAG CCAAGTGGAC 
GTAGTCCTCT CAAAAAACTT GAGGAAAGTT CTGGATGAAG CGCTCGCAAT GCTCTCCCCA 
AGGGAAGAAA AAATCCTGAG GTATAGGTTT GGACTATGCA ACAGTGTACA CAGTCCCGAA 
GATGAACACT ATTTGAAGTC TCTAAAAATT GACCTAAACA GAGGAACAAA TCTCACTCTC 
GAACAAGTCG GGATACTGTA CAATGTAACA AGGGAAAGAA TCAGACAAAT TGAGTCTAAG 
TCGTTAAGAA AAATGAGAAG TCCAAGCCGA TCTATAAAAT TACGGACTTT CCTTAAATAC 
TAA 

 

Protein sequence

MTKGYSSKFH QVVKALITKG VKRGFVTYGE LSDSFSDEDF ENLNCIEEAI SKLEESGIGI 
LEKDEEDELS EEVKEEDEEE DEAADILGHT DDPVRLYLRE MSYVKLLSRD DEVEIAKAIV 
AEKFESLSAV LLFPSVLKSI VNLGTKLREC TISLREVIES DSGLKSELTE ETGKGDDLFE 
GMDGKPEEGN QMSDEELMEK VLDIFGELET IITSALDKAK EGQMVKIVDG EVILDPEYRE 
LHTLAVNHLN QVKLNPKLLA EFFENTRKKN ELILEKKKVL LTFLEEHGLD RTVLIKGKVH 
ILDAVVLSEL LKEHNICDTH FSLEEFLSPI RELEKNEGMD YRSISFLTRK VATHLDNANA 
AKHRMVEANL RLVISIAKKY TNRGMPFPDL IQEGNIGLMK AVDKFDHRRG HKFSTYATWW 
CRQAITRAIA DCGSIVRKPV HIHETANKVM RTRRRLYNLN GREPTVEEIA NLLKISPDKV 
KKSLKVNQDP ISLESPVGDD SNSGSFGDFI EDKNAVSQVD VVLSKNLRKV LDEALAMLSP 
REEKILRYRF GLCNSVHSPE DEHYLKSLKI DLNRGTNLTL EQVGILYNVT RERIRQIESK 
SLRKMRSPSR SIKLRTFLKY