| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_3176 |
|---|
| Symbol | secD |
|---|
| ID | 3924721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | - |
|---|
| Start bp | 3470120 |
|---|
| End bp | 3471574 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637898781 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_504577 |
|---|
| Protein GI | 88604399 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAG ACACCTTTGT TGACATGATA AAGGATTACC GGGTAGCACT GTACCTGGTT
CTGCTGATTG CATCGATAAT TGTTATCTTT CCCCACCCGG GCCCGTCCGG ACTTGATACT
AATCTTCAGT TTGGCCTTGA CCTTGATGGT GGCTCCTGGA TTCAGCTTGA GTTTCAGTCA
GCCATCGTGA CGTTCAAGTC AGATCAGACG CTTGATAAAC TCATCCCTGA GCTGAAGACC
CGTCTTGATG CAGAAGTGAA CCTGATTGAT CAGAATACGG TTGAAATCAG GAGCGGCATC
TCTGAAGAAG ATCTTCGTGC GATAATGGCC GAGCTGAACA CCGAACTTGT CTCGTTCAAT
CCCGGAGTGA CTAAGGAGAC CGCAGATGAT GTGAAGCGCA TCCTGGAGAA CAAGATCAAC
AGTCTTGGGA CCCGTGATGC AAAGGTCTAC GTCATCACTG CTCTCAATGG CATCAGCCGG
TACATCCGTA TTGAGATGGC CGGGGTCTCG ATGGGAGAAG CCCAGGAGAT TGTCGGAAAA
CAGGGTAAGT TTGAGATTCG TATCCACACC ACCGGCAATG AGACAGAACA TGTCCTCTTT
GGTGATGCCA TCCAGTCTGT TGCAAACCCC TCCCAGACAC CGCCGAATAG TAATAACTGG
GGAGTGTCCT TTGTCATAAC TCATGATGCA GCAGAGGAGC TTCGGCAGGC TGCCATAAGA
GTTGGTGCAA CCAAGAAACC AGAAGGCCAT AATCTGGATA TGATCCTTGA TGGAAATGTG
GTCTATTCCG CTCCGCTTTC ACCAGACCTT GCTGCAGAAC TGCAGACACG GCCAACCTCA
AACCTGCTTG CCTCAACCGG TGTGGGTGAA GAAGGACGGG AGCAGGCCAA GCTTCTTGAG
ATTCATCTGA GAAATGGTGC GCTGCCGGTT GGTGTGACCA TTGCCGGATC CGGGTCTGTT
TCACCTGAAC TTGGTGATCA GTTCAAATTC TGGAGCGTCC TTGCCGGTGT ATTTGCACTT
CTCGCTGTTG CTTTCAGTGT GTTTATCAGG TATCGCGAGC CGGGTATCGT CTTCCCTATG
GTGCTCATCA ATGGTTCTGA AATCATCATC CTACTTGCAT TCACGACCTT CTTCATGCAG
CTGGACCTTG CGACCATCGC CGGTCTGATT GCGGTTCTGG GTACAGGAAT TGACCAGCTG
GTGATCATCA CTGATGAAAT CCTGCATGAA GGAAAGGTGC CGTCGCCGAA TCTGTATCTG
AAACGGCTGA AACGGGCTCT TGGTATCATT GTAGCATCCG CAGGAACGGT TCTTATCGCC
ATGCTTCCCC TGGCTGTTAT GGATCTTTCA ACCCTGCGTG GCTTTGCAAT CATTACCATT
CTCGGTGTTT TAGTGGGTGT TCTGGTAACT CGTCCGGCAT ATGGGCGGAT TATCATGTCT
ATCCTCTCCA AATAA
|
|---|
| Protein sequence | MDKDTFVDMI KDYRVALYLV LLIASIIVIF PHPGPSGLDT NLQFGLDLDG GSWIQLEFQS
AIVTFKSDQT LDKLIPELKT RLDAEVNLID QNTVEIRSGI SEEDLRAIMA ELNTELVSFN
PGVTKETADD VKRILENKIN SLGTRDAKVY VITALNGISR YIRIEMAGVS MGEAQEIVGK
QGKFEIRIHT TGNETEHVLF GDAIQSVANP SQTPPNSNNW GVSFVITHDA AEELRQAAIR
VGATKKPEGH NLDMILDGNV VYSAPLSPDL AAELQTRPTS NLLASTGVGE EGREQAKLLE
IHLRNGALPV GVTIAGSGSV SPELGDQFKF WSVLAGVFAL LAVAFSVFIR YREPGIVFPM
VLINGSEIII LLAFTTFFMQ LDLATIAGLI AVLGTGIDQL VIITDEILHE GKVPSPNLYL
KRLKRALGII VASAGTVLIA MLPLAVMDLS TLRGFAIITI LGVLVGVLVT RPAYGRIIMS
ILSK
|
|---|
| |