| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_3080 |
|---|
| Symbol | |
|---|
| ID | 3922338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | + |
|---|
| Start bp | 3354129 |
|---|
| End bp | 3355130 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637898690 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_504486 |
|---|
| Protein GI | 88604308 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.427857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.378634 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCTC ACATTATTGA AGAGGGTATT GAAAAAATTA TTAATAATAC CAATGATCTT
TCATTTGATA ATAAGCGGGT TTTGATAACC GGGGGATCAG GGTTCCTTGG ATCATGGCTT
TGTGATGCTC TTATAAGGAA GGGTGCGGAG GTTATCTGTC TGGATAATTA TGCTTCTGGA
AGAAAGGAGA ATACCGATCA TCTCTTAGGA GATCCATCTT TTACCAGAGT AGACCATGAT
ATTTCTATAC CTTATATTCC GGAAAAACCA GTAGATCTGG TTATGCATCT TGCCTCACGT
GCATCTCCTC TTGAATTTAC CGATTATCCC ATCCAGATTT TAAAATCAAA TACAATAGGG
ACGATGAATG CCCTTGGAAT TGCAAAAAAT TCGGGTGCAC GGTTTTTGTT CACCTCAACC
AGTGAGATAT ATGGTGAGGC ACAGGTTTTT CCCACTCCTG AAACATACCG TGGCAATGTT
AATACCTTAG GAATCCGGGG TTGTTATGAC GAGGCAAAAC GGGCGGGAGA GGCTTTTTGT
ATGGCGTATC ATCGTCAGCA TCATCTGGAC GTCCGGATAG TCAGAATCTT CAATACCTAT
GGCCCACGGA TGAGAAGTGA CGGGCTATAC GGTCGGGTGA TACCCCGTTT TTTGGATCAG
GCACAGAAAA ACCAGCCTAT CACCATCTTC GGCGATGGTT CTCAAACCAG GAGTTTCTGT
TATGTGACCG ACCAAGTAAC CGGCCTTTTG AAACTGGCCG GATATGATGG GATAGACGGG
TCTGTTATTA ATATAGGAAA TCCGTTGGAA ATGTCGGTTC TTTCACTTGC TGAGAAGATC
ATTGAGATTA CAGAATCACA GTCATCGATC AGTTATCACC CGCTTCCACC AGATGATCCG
TCACGGCGGT TTCCGGATAT TTCCAAAGCT GCAGAGGTAT TGAAATGGAA ACCACAGATA
AGCTTGGATT ATGGCCTTCG GGCGATGATT GCAGTGTCGT AA
|
|---|
| Protein sequence | MASHIIEEGI EKIINNTNDL SFDNKRVLIT GGSGFLGSWL CDALIRKGAE VICLDNYASG
RKENTDHLLG DPSFTRVDHD ISIPYIPEKP VDLVMHLASR ASPLEFTDYP IQILKSNTIG
TMNALGIAKN SGARFLFTST SEIYGEAQVF PTPETYRGNV NTLGIRGCYD EAKRAGEAFC
MAYHRQHHLD VRIVRIFNTY GPRMRSDGLY GRVIPRFLDQ AQKNQPITIF GDGSQTRSFC
YVTDQVTGLL KLAGYDGIDG SVINIGNPLE MSVLSLAEKI IEITESQSSI SYHPLPPDDP
SRRFPDISKA AEVLKWKPQI SLDYGLRAMI AVS
|
|---|
| |