| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3033 |
|---|
| Symbol | |
|---|
| ID | 3916645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 3244497 |
|---|
| End bp | 3246293 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640445813 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_498302 |
|---|
| Protein GI | 87201045 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.275745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACCGCC CAACTCGGCC AGCTCCCCGA ACCACGCTTC GCCATCCACG GCTTCGACCT
CGTGCGCAGG GAACTGGCCG CCTGATCCCG CCCGCCACCC CAACTCCGGC GCCGACGGTC
GCGCCGTGGA GCACCTACCG CAGGCTCTGG CCGTGGCTGC GCCCTCACGC CCCGCGCCTT
GCGCTGGTCC TGCTCGCCAG CCTTCTCGCG ACAGGCCTCA ACCTCGCGCA GCCGTGGATC
TCCAAGCTGA TGATCGACGA GGCCCTGCTC AAGCGCGACT GGGACGCGCT ACTACGGATC
GCCGGCCTCA TGGTGGCGGC CACCGTCGGC GGCTTCGCAG TCAATGCGCT CGTCTCCTAC
CGCTACGTCG CGATTTCCGC GCAGATGCTG TTCGACATGC GCGTCGCGCT GCTACGTCAC
CTCCAGACGC TCAGCCCCCG CTTCTACGGC AGTTTCCGCC TCGGCGATCT CATGTCGCGC
CTCAACAGCG ACGTTTCCGA TGTCCAGCGC GCAGCCGGGG ACACGCTCCT CTCGGTCCTC
AGCAATGTCC TGTTCTTCGC CGGCAGCGTC GGCATGATGC TGTGGCTCGA CTGGAAGCTG
TTCCTTGTCG GCACGCTGCT GGTGCCGCTG GCCGTCGCCA GCTTCCTCCA CTTCCAGCGC
CGCATGACCG ACCTTACCCG CCAGATGCGC GAGCGCGGGG CCGATATCGG CAGCCTGCTG
GTCGACACGA TCATGGGCAT GCGCACGGTC AATGCGCTCG GCGCCGAAGC ACACGAGGCC
GACCGTTTCC GCGCCGCCAA CGCTGGCTTT ATCCACGCGA TGTTGCGGAT GCAGACCGTC
TCGTTCCTCA CCGGCGCCTT GCCCGGCACC ATCGTCACCG CCTCGACTGC GGCCGTGATC
GTCTTTGGCG GCAAGCAGAT CATCGACGGC ACCATGACCA TCGGCGCTCT GGTCGCGTTC
CTCACCTATC ACGGCAGGCT GCTCGCGCCG GTCCAGGCGC TGATGGGCCT GACCGCCACC
CTCGCCTCCG CCCGCGTCGC ACTGGCGCGC ATCTTCGAGC TTTTCGACAC ATCGGCGGAA
GTCGCGGACG CCCCCGCGCC GCGCCCGCTT CCGCCGGTGA CCAGGGCGAT CCGCCTCGAC
GGCGTGACCA TGCACCACGG GCGCGAACCG GTCCTGCGCG ATGTCAGCCT GACCATCCCC
GCTGGCAGCC TGACCGCCAT CCTGGGCGCT TCGGGCGCGG GCAAATCGAC CCTGGCCGAC
CTCCTGGTGC GCTTCCTCGA CCCTGTCGCC GGGCGCATCA CCATCGACGG TATCGACCTC
CGCGACCTCG CTCTTGCCGA CCTGCGCCGC CGCGCGCTGC TGGTCGACCA GTCGCCCTTC
CTGTTCAACG CCACGATAGC CGAAAACATC GCGTTCGCCC GCACAGGTGC GCTCCCGGCA
GAGGTCGCCG CCGCAGCCGG CGCCGCCGGT CTGGACCCGC TGATCGCCCG CCTGCCGGAA
GGCCTCGCCA CCCGCACCGG CGAACGCGGC CTTGCTCTCT CTGCCGGAGA ACGCCACCGC
ATCGCGCTCG CCCGCGCGCT TCTGCGCAAG CCCGACGTGC TGATCCTCGA CGAGCCCACT
GCCGCGCTCG ACGAGGCGAC CGAGCGGCTC GTCGCGTCAG GCCTGCGCCG CGCGCTGCCC
GATGCAACGC TCGTCGTCAT CACCCACAAG CCGGCGCTCG CCGATCTGGC CGACCATGTC
GTGCGGCTCG AACAGGGCAA TGCCACGATC CAGCCCCAGG TGCCTGCCCA TGTATAA
|
|---|
| Protein sequence | MHRPTRPAPR TTLRHPRLRP RAQGTGRLIP PATPTPAPTV APWSTYRRLW PWLRPHAPRL
ALVLLASLLA TGLNLAQPWI SKLMIDEALL KRDWDALLRI AGLMVAATVG GFAVNALVSY
RYVAISAQML FDMRVALLRH LQTLSPRFYG SFRLGDLMSR LNSDVSDVQR AAGDTLLSVL
SNVLFFAGSV GMMLWLDWKL FLVGTLLVPL AVASFLHFQR RMTDLTRQMR ERGADIGSLL
VDTIMGMRTV NALGAEAHEA DRFRAANAGF IHAMLRMQTV SFLTGALPGT IVTASTAAVI
VFGGKQIIDG TMTIGALVAF LTYHGRLLAP VQALMGLTAT LASARVALAR IFELFDTSAE
VADAPAPRPL PPVTRAIRLD GVTMHHGREP VLRDVSLTIP AGSLTAILGA SGAGKSTLAD
LLVRFLDPVA GRITIDGIDL RDLALADLRR RALLVDQSPF LFNATIAENI AFARTGALPA
EVAAAAGAAG LDPLIARLPE GLATRTGERG LALSAGERHR IALARALLRK PDVLILDEPT
AALDEATERL VASGLRRALP DATLVVITHK PALADLADHV VRLEQGNATI QPQVPAHV
|
|---|
| |