Gene Saro_2896 details

Gene Information

• Locus tag: Saro_2896
• Symbol: def
• ID: 3915535
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: +
• Start bp: 3115464
• End bp: 3116030
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640445675
• Product: peptide deformylase
• Protein accession: YP_498166
• Protein GI: 87200909
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.277064
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCATCC GCGAAATCAT CGAAGTCCCC GACCCGCGCC TGAAGCAGGT CTCCGTCCCC 
GTCGAGAAGT TCGACGACGA GCTGAAGACG CTTGTCGAGG ACATGTTCGA AACGATGTAC 
GATGCCCCCG GCATCGGCCT CGCCGCGATC CAGGTGGGCG TGCCCCTGCG CGTGCTGGTG 
ATCGACCTCC AGCCCGACGA TCCCGACGCC GAGCCGGTCG CCTGCGACCA TGACGGCCAC 
CATCACCACC ACCAGCCGAC GAAGAAGGAG CCGCGGGTCT TCATCAACCC CGAGATCCTC 
GATCCGTCGG AAGAATACAG CGTCTACCAG GAAGGCTGTC TCTCGGTCCC CGAGATCTAC 
GCCGAGGTGG AACGCCCCGC CACGATCCGC GCGCGCTGGC AGGATCTAGA CGGCAAGGTC 
CACGAGGAGC AGATGGAAGG CCTGATGGCC ACTTGCCTCC AGCACGAGAT GGACCATCTC 
GAGGGCGTGC TGTTCATCGA CCACCTCTCG CGCCTCAAGC GCAACATGGC GCTCAAGAAG 
CTGGAAAAGC TGCGCAAGGC GGCGTGA 

 

Protein sequence

MAIREIIEVP DPRLKQVSVP VEKFDDELKT LVEDMFETMY DAPGIGLAAI QVGVPLRVLV 
IDLQPDDPDA EPVACDHDGH HHHHQPTKKE PRVFINPEIL DPSEEYSVYQ EGCLSVPEIY 
AEVERPATIR ARWQDLDGKV HEEQMEGLMA TCLQHEMDHL EGVLFIDHLS RLKRNMALKK 
LEKLRKAA