| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2653 |
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| Symbol | |
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| ID | 3918427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 2889499 |
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| End bp | 2891745 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640445430 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_497923 |
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| Protein GI | 87200666 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTGC GCACGCTTTT CGGCCCCCGG ATGCTTCTCG GCGCCGCCGC ACTTGCCCTT
GCTGTCCCAC AGGCGGCTCT GGCCCAATAC ACCCTCAACG TGCGCGAGGC CGACATTCGC
GCCTTCGTTG CCGATGCCGC AGAGGTCACC GGGCGCACGT TCATCGTCGA CAGCCGCGTG
CAGGCAAAGA TCAGCGTGGT CTCGGACCGG CCGTTGAGCC GCTCGGAATA CTTCGAGGTC
TTCCTTTCCA CCTTGCGCGC CAACGGCCTC GTTGCCGTGC CGACCGGCAA TGGCGCATTC
CGCATCCAGC CCGCGGAAGG CGCGGCCACC AATCCCACTC GCATCGGCAG CCGAGGCGCG
GCGCAGAGCC AGATGGTGAC CGAGGTCGTC CGACTGCGGA CCATCGATGC CGCCCAGGCG
GTCGAAACCC TGCGCCCGCT CGTCAGCAAG GAAGGCGCGA TCACCGCGAA CAAGGCGGGC
AATTCGCTGG TCATCGTCGA CTATGCCGAC AATCTGCGCC GCATTCGTGC GCTGCTCGGC
GATATCGACC GCGACAGCAC GACGACCCAG ACCGTCATCC TCGAACATGC CGGTGCGCGC
GAAATCGCCA CTGCGCTTAC CCAGCTCGTC CCCGCAGGTG CCGAAGGCGC GCGGGCGCTG
GCAACTGTCG TTGCCGTCGA CAGCGCGAAC GCGGTGCTGA TGCGCGGCGA TGGCTCGACG
TTGTCGCGCC TCTCCGCGAT GGCTCGGCAG CTTGATGCCA AGGCCGCGCT GGGTGGCGAA
ATCAAGGTCG TCTGGCTCGA TTATGCCGAT TCGGCCGCGC TCGTGCCGGT GCTGGAACGG
CTGATCGGCG GGCAGGGCGG CGGCGAAGTG GCTTCGGCCA GCGCCGCGCC CATCTCGCTC
GGCGGGGTTG GCAGCAACGC GACCTCGACG GCGGGAACGC AGGGCAGCAC CGGCCAGGCC
GCGTCGACCG GCGGCTCCTC GACCAGCCCG ATCGGCGCTA CCTCGGGCGG GCTCGGCAAT
GGGCCGATCA AGCTGGCGAA CGGACGCGGG ACCGCCACGA TCACGCGTTA TCCGGGTGCC
AACGCGATCA TCATCGCCGC CCCCGCCGAC GAGCAGCGTC GCCTCAGCGA ACTGATCCGC
CAGCTCGACC TTCCGCAGGA ACAGGTTCTG GTAGAGGCGA TCATCGTCGA GATCTCGAAC
GACGTGGCGA AGGAATTGGG CGTCCAGATG CTGTTCGGCG GCAAGAACAT GCCCTTTGCC
GTCACCAACT ATTCCAACAG TTCGCCCAAC ATCATCGACA TCGCGGGTGG GCTGCTGGCT
GACAACCTCA ACCAGACCAC GACCGTGGTG AATGGCGATA CCGTCACCAC CACGACCAAC
AGCACGGCGG GCGATCTCCT GCGCGAGAAT GCGGCAAGCA AGCTCCTGTC CGCGCGCGGG
GCCTATACCG GTTTCCTCAC CGAGCTGTCC AAGGACACTT ATCTCGGCGC GATCATCAAC
GCGGTGCAGA CCGACAAGAA CTCGAACATC CTGTCGACGC CGCACATCAC CACCAACAAC
AACGTTCCCG CCTCGATCCT GTTCGGGCAG GAAATCCCTG TGTCGACCGG CGAGGCCCTC
TCGGGCGGCA ATTTCAGCGA CACTTTCCGC ACGATCCAGC GCCAGAACGT CGGCATCGAA
CTGGACGTGA CGCCGCAGAT CAATGCCAGC AACATGATCC GGCTGGACCT GCGCCAGGAA
GTCAGCTCCA TCGCCGGGAC CGTGTCGAAG ACCTCGAACG AACTCATCGT CAACAAGCGC
GAGATCAAGA CCACCGTCAC CGTGGGCGAC CGCGAGATCG TCGCCCTCGG CGGCCTGCTC
GACGACAACG AGCAGCGCAC CTTGCAGAAG GTGCCGCTCC TCGGCGACAT TCCCATCCTG
GGCGAGGCGT TCAAGTCGCG CGCGCGCAGC CGGGTGAAGA CCAACCTCAT GGTGTTCATC
CGCCCGACCA TCCTGCGCAA TGCCGCCGAC CGCCAGGCTC TTGCCGCGCG GCGCTATGGC
GTGGTGCGCG ATGCGCAGGT CAAGTTCGAT TCCAAGCGTG AACCGACCAT CGACGATCTG
ATCGTCGACT ACATGGGCGC CACCTTGCCG GTCGCTCCTT CCGCCGAGGT CGCGGTGGTA
GCGCCGGGCG ATACGGTCGT GCGCCCAAGG GCTGCCGCGA CGCCGCTCGA ACCCGCCGAA
CTCCCGCCCA GCAGCGCGCG GAACTGA
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| Protein sequence | MKLRTLFGPR MLLGAAALAL AVPQAALAQY TLNVREADIR AFVADAAEVT GRTFIVDSRV
QAKISVVSDR PLSRSEYFEV FLSTLRANGL VAVPTGNGAF RIQPAEGAAT NPTRIGSRGA
AQSQMVTEVV RLRTIDAAQA VETLRPLVSK EGAITANKAG NSLVIVDYAD NLRRIRALLG
DIDRDSTTTQ TVILEHAGAR EIATALTQLV PAGAEGARAL ATVVAVDSAN AVLMRGDGST
LSRLSAMARQ LDAKAALGGE IKVVWLDYAD SAALVPVLER LIGGQGGGEV ASASAAPISL
GGVGSNATST AGTQGSTGQA ASTGGSSTSP IGATSGGLGN GPIKLANGRG TATITRYPGA
NAIIIAAPAD EQRRLSELIR QLDLPQEQVL VEAIIVEISN DVAKELGVQM LFGGKNMPFA
VTNYSNSSPN IIDIAGGLLA DNLNQTTTVV NGDTVTTTTN STAGDLLREN AASKLLSARG
AYTGFLTELS KDTYLGAIIN AVQTDKNSNI LSTPHITTNN NVPASILFGQ EIPVSTGEAL
SGGNFSDTFR TIQRQNVGIE LDVTPQINAS NMIRLDLRQE VSSIAGTVSK TSNELIVNKR
EIKTTVTVGD REIVALGGLL DDNEQRTLQK VPLLGDIPIL GEAFKSRARS RVKTNLMVFI
RPTILRNAAD RQALAARRYG VVRDAQVKFD SKREPTIDDL IVDYMGATLP VAPSAEVAVV
APGDTVVRPR AAATPLEPAE LPPSSARN
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