| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2639 |
|---|
| Symbol | |
|---|
| ID | 3917072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 2874470 |
|---|
| End bp | 2875915 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640445416 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_497909 |
|---|
| Protein GI | 87200652 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCCCCTC CCCACGGCCG AGGCCGCGAT CTTACCAGCG GCCCGATCCT GAAGACGCTG
GTCCTGTTCT CCGCGCCGAC ACTGGCCTCG AACATCCTCC AGTCGCTCAA CGGCTCGATC
AACTCGATCT GGGTGGGGCA GATGCTGGGG GAAGGAGCCC TGGCCGCGAC CGCCAACGCC
AACGTGATCA TGTTCCTGGT GTTCGCGGCG GCCTTCGGTT TCGGCATGGC GGCAACCGTG
AAGATCGGCC AGGCCTTCGG TGCGCGCGAC GTTCTGGCGG CGCGCCGCAC GTTCGGTTCA
GCGGTCGGGT TCTGCGTGAT GCTGTCGCTG GTCGTGGGCA CGCTGGGGTG GATCTTCGCA
CCTGACCTTC TGATGGCCAT GGCCGCCCCG GGCGAAACCT ACATCTACGC GTTGACCTAC
CTGCGCGTGA TATTCATCGC GATGCCGGCC TCCATGGTCA CGGTCATGCT CGGCATGGGC
CTGCGCGGTG GCGGCGATGC GTCGACACCG CTCAAGTTCA TGGTGCTGTC CTCGGTACTC
GACGTCATCC TCAACCCGCT CCTCATCGGC GGATTCGGAC CGATCAAGCC GTTGGGCATT
GCGGGCGCGG CGCTGGCCAC GGCCATCGCC TCGTTCGTCT CGATGACCGG CATCGTTGCC
TACGTCTACG CCAAGGACCT GCCCCTTCGC CTCAAGGGCG CGGAACTCGC CTGGCTCTGG
CCGCGCCGCG ACGAACTGCG CTACATCCTG ACGAAAGGCC TTCCGATGGG CGCGCAGATG
CTCGTCATTT CGGCGGCGGG CATCATCGTG ATCGGCCTCG TCAACCGCGA GGGCCTGCTG
GTCAGCGCCG CCTATGGCGC GGCCCTCCAA CTCTGGACCT ACCTGCAGAT GCCGGCCATG
GCCATCTCTG CCGCTGTCAG CGCCATGGCC GCGCAGGCCA TCGGCGCGGG CCTCGACGAG
CGTCTCGGCC GGATCTCACG CTCCGGCGTC CTGCTCAACC TGACCGTCAC CGGTGCGCTG
TGCGCCGCAA TCCTGCTGTT CGACCGGCCC GCGCTCGAGC TGTTCCTCGG ATCGGCCAGC
CCGGCGGTAG ACGAGGCCCG CCACATCCAG TTCCTCGCAA GCTGGAGCTA CCTGCTGTTC
GGAATAACCA TGGTGCTGTT CGGCACGATG CGTGCGGGCG GCGTTGTGTG GACACCGCTC
ATCATCCTCT CCATCGCCAT GTATCCGGTG CGCCTGGGCT TCTATTTCGC CTTCTACCCG
ACGCTGGGTG CGGATGCCCT GTGGCTCGCC TTCCCCGTCA GTTCGGCGGT GGCCGTCGCG
CTCGCGGTCT ACGCTTATAG CCGCCCCTTC TGGCGAGAGC GGACGCGAGC AGTGCCTGAC
GAGGAATGCG AGGAGGAAAC CCACGCCGAC GCCGACCCGG CAGGTCGCAT GGCGCCGGCA
CTCTGA
|
|---|
| Protein sequence | MAPPHGRGRD LTSGPILKTL VLFSAPTLAS NILQSLNGSI NSIWVGQMLG EGALAATANA
NVIMFLVFAA AFGFGMAATV KIGQAFGARD VLAARRTFGS AVGFCVMLSL VVGTLGWIFA
PDLLMAMAAP GETYIYALTY LRVIFIAMPA SMVTVMLGMG LRGGGDASTP LKFMVLSSVL
DVILNPLLIG GFGPIKPLGI AGAALATAIA SFVSMTGIVA YVYAKDLPLR LKGAELAWLW
PRRDELRYIL TKGLPMGAQM LVISAAGIIV IGLVNREGLL VSAAYGAALQ LWTYLQMPAM
AISAAVSAMA AQAIGAGLDE RLGRISRSGV LLNLTVTGAL CAAILLFDRP ALELFLGSAS
PAVDEARHIQ FLASWSYLLF GITMVLFGTM RAGGVVWTPL IILSIAMYPV RLGFYFAFYP
TLGADALWLA FPVSSAVAVA LAVYAYSRPF WRERTRAVPD EECEEETHAD ADPAGRMAPA
L
|
|---|
| |