| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2554 |
|---|
| Symbol | |
|---|
| ID | 3916876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 2756814 |
|---|
| End bp | 2758046 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640445312 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | YP_497824 |
|---|
| Protein GI | 87200567 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.61873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTT CCGACAACAT GAGCGATCTG GGGCCCGGCA CGCGCGGCGT GCTTGCGGGG
CGGCGGGAAG AGTGGACGGG CACGCCCGAT CATCCCGGGG CCGTGGTCAA TCCTGCCGTA
TGGCGCGCAT CGACGCATCT CTACCCGGAC ATGGCGGCGC TGCGGGCGCA TCCGGCCAAC
GAGGACGGGC GGTTCTATTA CGGACGGCGC GGCGCCCCGA CGCAGTGGGC GCTGGCCGAG
GCGTTGACGC AGATCGAACC GGGCGCGGCA GGGACCGTGC TCTATCCATC GGGCGTCGCG
GCAATCGCGG GCGTACTGCT GACAATGCTG CGACCGGGCG ACGTGCTGCT GATGACGGAC
AACGCCTATG AACCGAGCCG CGTGATGGCA CGAGGGTTGC TCAGGGATTT CGGCGTGGAG
ACGCGCTGGT TCGATCCGAC GAGCATTGGC GCCTTCGAGG CCGCCTGCTG CGACAGGACG
AAGGCGGTGC TGCTGGAAAG CCCCGGCAGC CTGACCATGG AAGTGCAGGA CGTGCCCGCG
CTGGCGGCTG CGGCGAAGGC GCGCGGGATC GTCAGCGTGC TGGACAACAC GTGGGCATCG
CCGCTGGGAT TTGCGGGTCT TTCGCACGGC GTCGACATCG TGGCGATGAG CCTGACCAAG
CATGTGTCCG GCCATTCCGA TTGCATGATG GGCAGCGCCA GCGCGGGACC GGACTGGTAT
CGCAAGCTGC GCCTGCGCTC GCAGGGACTG GGGCTGGTGG TTTCGCCCGA CGATGCCTCG
CTGATGCTGC GCGGCCTCAG GACCATGAAG ATGCGGCTTG AGGCGGAGAC CGCTTCGGCG
CTGGCCATCG CCGGGTGGCT GGAGGGACGG CCCGAGGTGG CGCGGGTGCT GTGCCCGATG
CTGCCGGGAT CGCCCGGCCA CGAGTTGTGG GCGCGCGACT TTGCCGGCGG CTGCGGGCTG
TTCAGCTTTG TCCTGAAGGG CGGCAGCAGC GCGGCGCGCG ATGCGCTGAT CGATGCGCTT
GCGCTGTTCG GCATCGGCTA TTCGTGGGGC GGGTTCGAGA GCCTGGCGAC ACCGGTCGAT
CCGGCATCGA TCCGCACGGC GAGCGCGTGG CCGCTGGCGG GCATGGCGAT GGAGGACCGC
TTCGGCGTGC GGCTTTCGAT CGGGCTGGAG GACACCGCCG ACCTCATCGC GGACATCGAG
CAGGCGCTTG GCGCGTGGAG GGCGGCGCTG TGA
|
|---|
| Protein sequence | MSSSDNMSDL GPGTRGVLAG RREEWTGTPD HPGAVVNPAV WRASTHLYPD MAALRAHPAN
EDGRFYYGRR GAPTQWALAE ALTQIEPGAA GTVLYPSGVA AIAGVLLTML RPGDVLLMTD
NAYEPSRVMA RGLLRDFGVE TRWFDPTSIG AFEAACCDRT KAVLLESPGS LTMEVQDVPA
LAAAAKARGI VSVLDNTWAS PLGFAGLSHG VDIVAMSLTK HVSGHSDCMM GSASAGPDWY
RKLRLRSQGL GLVVSPDDAS LMLRGLRTMK MRLEAETASA LAIAGWLEGR PEVARVLCPM
LPGSPGHELW ARDFAGGCGL FSFVLKGGSS AARDALIDAL ALFGIGYSWG GFESLATPVD
PASIRTASAW PLAGMAMEDR FGVRLSIGLE DTADLIADIE QALGAWRAAL
|
|---|
| |