| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2165 |
|---|
| Symbol | |
|---|
| ID | 3918830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 2303603 |
|---|
| End bp | 2304127 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640444920 |
|---|
| Product | Type IV secretory pathway protease TraF-like |
|---|
| Protein accession | YP_497438 |
|---|
| Protein GI | 87200181 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCCG CTGATCTCTT GATCCGCTCA GCTTCGGCGC GCCGGCTCGT GCTTTGGGGC
GGGCTCGGCG CCGGGGCACT GGCGCTCTCC TCGCTTGCCG CCTTCGCGCA GGGCCATGCG
CTTATGATCA ATGTGAGCCC CAGCCTGCCC TACTGGGCCA TCTGGGTCAC GCGGGGGGCA
CCCGTGCATC GCGGGGACAT TATCCTGTTC GACCCGCCCA CCTCGCCTTT GTTGGTCAAG
CATTTCGGGG CGAAGCCCAA GCCGTTCGGC AAGCGGGTGA GCGGTGTTCC GGGCGACATC
ATCACCGAGC AAAACCGCAT CTACTTCGTC AACGGTGAGG CCGTGGCCAA GGCCAAGCTT
GAGAGCCGCC TCGGCGAACC GCTGGCGCTT GGACCTACGG GGCGCGTGCC GAAAGGCTGC
TACTTCGTCA CCAGCGAACA CAAGGATGGC TTTGACAGCC GCTATGCCGC GATCGGTTGG
ATCTGTGGAC CGCGCATACT CGGGGTCGGG AGGCCAATCC TGTGA
|
|---|
| Protein sequence | MLPADLLIRS ASARRLVLWG GLGAGALALS SLAAFAQGHA LMINVSPSLP YWAIWVTRGA
PVHRGDIILF DPPTSPLLVK HFGAKPKPFG KRVSGVPGDI ITEQNRIYFV NGEAVAKAKL
ESRLGEPLAL GPTGRVPKGC YFVTSEHKDG FDSRYAAIGW ICGPRILGVG RPIL
|
|---|
| |