| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1948 |
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| Symbol | |
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| ID | 3917263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 2064303 |
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| End bp | 2066582 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640444695 |
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| Product | ribonuclease R |
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| Protein accession | YP_497222 |
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| Protein GI | 87199965 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.45898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAAGC ACAAATTTCC CCAGGGTCTT CCCACGCGCC AACAGGTGCT GGATTTCATC
GCGCAGTCTG ACGAGCCTGC CGGCAAGCGC GAGATCGCCA AGGCGTTCGG CCTCAAGGGT
ACAGAGAAGA TCGCGCTCAA GGCGCTGCTC AAGGACATGG CCGAGGAAGG CCTGATCGAC
GGCAATCGCA GTGCGTTCCA CGCCATGGGC GGCGTGCCGC GCGTCACCGT ACTGCGCATC
GTCGAGATCG ACGAAGGCGA GCCGGTCGCC ATTCCCGACA CCTGGCAACC CGATGACGCA
AGCCCGCCGC CGCGCTTGCG AGTGGTCGAG CCGAGGGGCA AGCCGCGCGA GCGCAACGCC
GCGCTCCGCG TCGGCGATCG CATCCTTGCC CGTACCGAGG AGGCGGGGAA GGGCTGGCTC
GCGCATCCGA TGAAGAAGCT CCAGGGTGGC GAGGAACGGC TCATGGGGGT CGTCGAACTG
GACGGTACCG GCAAGGGCTG GCTAGCGCCA GTGGACAAGC GCGTGCGCAA TGCCGTGCCC
ATTTCGGATT TGGGCGGCGC CGAGGAAGGT CAACTCGTCC TTGCCGAACC GGCGGGCCGC
TCGCCCCGCT CAGGAATGAG GGTTACCGCC GTTCTCGGTG ATCCGCTCGC CCCGCGCGCA
TTCAGCCTGA TCGCGATCCA CAAACACGGC ATTCCCTTTG TCTTCCCGCC AGCAGCGATC
GAGGAGGCAG AGGTTGCGGC GAAGCTGCCG CTCAGCGAAG CGCGCCGCGA GGACCTGCGC
CATCTGCCCA TCGTTGCAAT CGATCCCGCA GACGCGCGCG ATCACGACGA TGCCATCTGG
GCCGAGCCGG ATGGGGAAGG CGGCTTCCGC GCGATCGTCG CCATTGCCGA CGTCAGCTTC
TACGTCCGCC CCGGCGGCCA GACCGACCGA GAGGCCCGCA AGCGCGGCAA CTCGGTCTAC
TTCCCTGATC GTGTCGTGCC GATGCTGCCC GAGGTATTGA GCGCCGACGT CTGTTCGCTC
AAGTCCGGTG CCGACCGTGC GGCGATGGCC TGCCACCTTT CGATCGACGC CCACGGGCGG
GTCAAGGACT TCCGCTTCAC GCGCGCGCTC GTTCGCATTG CCGAAGTCAT AGCCTATGAG
GAGGCGCAGC GCCGGATCGA TAGCAAGGAA GCAGCCCCTC ATCTCGTCCA TCTCTGGGAT
GCCTGGCGCC TGCTCGAAAA GGCCCGCCAC GCTCGTGACC CTCTCGAACT CGAACTGCCG
GAGCGCCGGG TCGTTCTGGA TAGCGCGGGC AAGATCGCGG AGATCGCGAT TCGCGAGAGG
CTCGACGCGC ATCGCGTGGT CGAGGACTTC ATGATCGCGG CCAACGTTGC CGCCGCAAAG
GCGCTGGAAG CCAAGGTGGC GCCGGTCGTC TATCGCATCC ACGAGCCGCC GAACCGGGAA
AAACTGGTCG CGCTCAAGGA CTATCTCGCG ACCTTCGACC GCAAATTGTC GCTCGGACAG
GTGATCACGC CTTCGCTGTT CAACCGCATG CTAAAGGACA TCGCGGACGA GGCGGAGAAG
GCACTCATCA TGGAAGCGGT GCTGCGCAGC CAGACCCAGG CCTATTATGG CCCGCGCAAT
GCCGGGCATT TCGGCCTGGC ACTGGGTTCT TACGCCCACT TCACATCACC AATCCGTCGC
TATTCCGACC TCCTGGTACA TCGGGCGCTG GTCGACGCTT ACGATCTTGA ACAGCCGCGT
CCATCAGTCG GGGTGCCACC CACGTCCGGC CTGTCCGACC GCGACCGCGC CGATCTCGCC
CGCGTATCGG AAGCGATCAG TAACGCCGAG CGTCGAGCGA TGGAGGCCGA GCGCGAGACT
ATCGATCGCT ATGTCGCGGC CTGGCTGTCG GGCAAGGTCG GTGAGGTATT CGACACGAGG
ATCACCGGCG TCCAGAAGTT TGGCCTGTTC GCAACGATCA TCGGGCTTGG TGGCGATGGT
TTGGTACCGG TCTCCACGCT CGGGGCCGAA CGCTTCAACT ACGACGAAAA GGCCCAGCGC
CTTATCGGGG AGTTGAGAGG CGAGGAATTC GCGATGGGTC AGATCCTCAA GCTCCGTCTC
GCAGAGGCGA ACCCGCTGAC CGGAGCGCTG AAGTTTGAGC CGGTCGACGT TGCCGAAGGC
GTTCAGCGCA TCGAACGGCG CGGCGGTCGG TCGGAGCAGA AACCGCGCAG GCAAGGCAAC
TACATGGCGG GAAAGCGCGG ACGACCGTCC AACATCCGCC ATCAGGGTCG CAAGAAGTAG
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| Protein sequence | MAKHKFPQGL PTRQQVLDFI AQSDEPAGKR EIAKAFGLKG TEKIALKALL KDMAEEGLID
GNRSAFHAMG GVPRVTVLRI VEIDEGEPVA IPDTWQPDDA SPPPRLRVVE PRGKPRERNA
ALRVGDRILA RTEEAGKGWL AHPMKKLQGG EERLMGVVEL DGTGKGWLAP VDKRVRNAVP
ISDLGGAEEG QLVLAEPAGR SPRSGMRVTA VLGDPLAPRA FSLIAIHKHG IPFVFPPAAI
EEAEVAAKLP LSEARREDLR HLPIVAIDPA DARDHDDAIW AEPDGEGGFR AIVAIADVSF
YVRPGGQTDR EARKRGNSVY FPDRVVPMLP EVLSADVCSL KSGADRAAMA CHLSIDAHGR
VKDFRFTRAL VRIAEVIAYE EAQRRIDSKE AAPHLVHLWD AWRLLEKARH ARDPLELELP
ERRVVLDSAG KIAEIAIRER LDAHRVVEDF MIAANVAAAK ALEAKVAPVV YRIHEPPNRE
KLVALKDYLA TFDRKLSLGQ VITPSLFNRM LKDIADEAEK ALIMEAVLRS QTQAYYGPRN
AGHFGLALGS YAHFTSPIRR YSDLLVHRAL VDAYDLEQPR PSVGVPPTSG LSDRDRADLA
RVSEAISNAE RRAMEAERET IDRYVAAWLS GKVGEVFDTR ITGVQKFGLF ATIIGLGGDG
LVPVSTLGAE RFNYDEKAQR LIGELRGEEF AMGQILKLRL AEANPLTGAL KFEPVDVAEG
VQRIERRGGR SEQKPRRQGN YMAGKRGRPS NIRHQGRKK
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