| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1823 |
|---|
| Symbol | |
|---|
| ID | 3918382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 1923888 |
|---|
| End bp | 1925978 |
|---|
| Gene Length | 2091 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640444564 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_497097 |
|---|
| Protein GI | 87199840 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.077851 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTGCACC GCTTCGAAAT TCTTTCCGCC GTTTCCCTGG CCGCGATCGC CCTGAACGCG
ACCGCCGCCC ATGCCGACGA AGCGGAGGAC ACCGAAAACC GCATTACCGT CATCGGCGAC
CGCGCCGAAG GCGTGGCCAG CGGTGCCACC GGCCTTCCCC TCGCCATTGT CGACACCCCG
CAGTCGGTCA CCGTGATCGA CCGCGGCGTG CTCGACGATT TCGCGTTCGA CGAAGTCAAC
GACGTCCTGC GCTATGTCAC CGGCGTCAAC GTCGAGGAGG CGGAGACCGA CCGCACCTAT
TACAACGCGC GCGGTTTCGA CATCACAGAG GCAATGGTCG ACGGCATCCA GCTCCCCAAC
ATCTGGGGCC CCTCGATCGG CTCGCTCGAC ACCGTCATGT GGGATTCAAT CGAGGTCGTG
CGCGGTGCCA ACGGCCTTCT CTCGGGCGTC GGCAACCCTT CCGGCACGAT CAACTATCGC
CGCAAGCACT CAACGGGCGA GCGCCGTATC TCTGGCGAGC TCACCGCCTC CTCGTGGAAC
CGCATGCGCG GCGAATTCGA CATCGACATG CCGCTCACCG CTGACGGCAA CTGGGGCGTG
CGCATCGCGG GCGCCGCGCA GAACGCGGAC TCGTACCTGC GTGACTACCG CTCCAGCCGC
ACCGCAATAC AGGCCGTGGT CGACGGCCGC CTGTCCGACA GTCTTGCCGT CTCCTTCGGC
TATGCTCGCC AGCAGGGCAC CTCGCGCGGC GTGCTGTGGG GTGCACTTCC GCTCCTCGAC
AGCGCGGGCA ACCAGCTTGA CTGGGACGTC CCCACTTCGA CCACCCAGGA CTGGACCTAC
TGGAAGAACA GCGACCAGAC CGCGTTCGGC GAAGCGACCT GGACCTTCGC GCCGGGCTGG
TCGGTCAGGA CCCACCTCAC CCGCCGCGTG AACGACGAAC CCTCGCGTCT GTTCTACGTC
TACGGCACGC CCGACGCAGA CACCGGCCTC GGCCTCTACG GCTACCCGGG CGGCTACCTT
TCCACCGCAC GAGGCTGGAT CTGGGACAAC CGGCTCGACG GCACCTTCAA GCTCTTCGGC
CGCGACCAGA AGCTCACTGT CGGCGTCCAG CGAACTGCCG CAAAGTTCGG TTACCTGACC
TACCCCGTCG CAACGACCGA TCCCGCATGG GGCGCACTGC CCTCGTTGCA AAGCGGCTGG
GACGGCAGCG AAGTAGCATA CCCGGCCTTC GGCGACCCGG TCGAAAGCGC GCGCATCAAC
GACAGGCAGT GGCGCGTGCG GGCCGCGACG GATCTTGAAC TGACCGACCG CATCGGCCTG
ATCCTCGGCG CCAACTACGT CGACGTGCAG ACCACCGGCT TCACCTTCGG CGTCAGTGCC
GCCCGCAGCG AAAGCGCGGT CAGCCCGTTC GTCGGCGCAA CCTTCAAGGT CGTCCCCGGC
GTCAACTTCT ACGCAAGCTA CAGCGATATC TTCAATCCGC AGAAGGAACT CGGCACCGAC
CTGAGGCCCG TAGGCTCGGC CAAGGGCAAG AGCTGGGAGG CAGGTCTCAA GGGCGAGACC
CCAGACAAGG CCCTTTTCGG CTCGGTGGCG CTGTTCCGTT CCGAACAGTC CAACCTCGCA
GAATCCTCCG GGTATGACGC GGACCTCGGC CAGACGCTCT ACACCGGCAT TTTCGTGCGC
AGCCAGGGCA TCGAGGCCGA GATCGGCGGG CGGATCGCCT CCGGCCTGAC TCTTCAGGGC
GGCGTGACCC ACTTGTCGCT AGAAGGCCGC GACGGCGCGC CTGTGCGAAC TTACGTGCCG
CGCACGACCG CCAATCTCCT CCTGCGCTGG GAACCGGTCG AAAAGCTCCA GCTCGGCGCG
GCGCTGCGCT GGCAGGACGA TATCTCGACC ACCAACACCC TCGGCACGAT CCGCCAGGGC
GATTACGCCA CGCTGCAACT CCAGGCCGGA TACAAGCTGA CCGACTATGT CAGCTTCAAC
CTGAATGTCG CCAACGTCAC CAATCACAAG CACCTCGCCA GCCTCTACTG GGACCAGTCG
TTCTACGCTC CGCCGCGCAG CGTGACCGGC TCGATCCGGA TGACCTTCTG A
|
|---|
| Protein sequence | MLHRFEILSA VSLAAIALNA TAAHADEAED TENRITVIGD RAEGVASGAT GLPLAIVDTP
QSVTVIDRGV LDDFAFDEVN DVLRYVTGVN VEEAETDRTY YNARGFDITE AMVDGIQLPN
IWGPSIGSLD TVMWDSIEVV RGANGLLSGV GNPSGTINYR RKHSTGERRI SGELTASSWN
RMRGEFDIDM PLTADGNWGV RIAGAAQNAD SYLRDYRSSR TAIQAVVDGR LSDSLAVSFG
YARQQGTSRG VLWGALPLLD SAGNQLDWDV PTSTTQDWTY WKNSDQTAFG EATWTFAPGW
SVRTHLTRRV NDEPSRLFYV YGTPDADTGL GLYGYPGGYL STARGWIWDN RLDGTFKLFG
RDQKLTVGVQ RTAAKFGYLT YPVATTDPAW GALPSLQSGW DGSEVAYPAF GDPVESARIN
DRQWRVRAAT DLELTDRIGL ILGANYVDVQ TTGFTFGVSA ARSESAVSPF VGATFKVVPG
VNFYASYSDI FNPQKELGTD LRPVGSAKGK SWEAGLKGET PDKALFGSVA LFRSEQSNLA
ESSGYDADLG QTLYTGIFVR SQGIEAEIGG RIASGLTLQG GVTHLSLEGR DGAPVRTYVP
RTTANLLLRW EPVEKLQLGA ALRWQDDIST TNTLGTIRQG DYATLQLQAG YKLTDYVSFN
LNVANVTNHK HLASLYWDQS FYAPPRSVTG SIRMTF
|
|---|
| |