Gene Saro_1766 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_1766 
Symbol 
ID3918325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand+ 
Start bp1862492 
End bp1863166 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content67% 
IMG OID640444507 
ProductABC transporter related 
Protein accessionYP_497040 
Protein GI87199783 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0656003 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGATC CAGTGGTGCG CCTGCGCGAG CTGCGCCGTT CCTTCAGCCA GGGCGGGGTC 
ACCATCGACG TCCTGCGCGG CGTCAACCTC GAGATCCGCC CCGGCGAGAT CGTCGCGCTG 
CTCGGCCCTT CGGGATCGGG CAAGTCGACC ATGCTCCAGG CCATCGGCCT GCTCGAGGGT 
GGTTTTTCCG GCCTGATCGA GATCGCCGGG ACCGATGCGT CGAAGCTTTC GGGCGACGAC 
CGCACGGCCC TGCGCCGCGA TCACCTCGGC TTCGTCTACC AGTTCCATCA TCTCCTGCCC 
GATTTCAACG CGATCGAGAA CGTCGTCCTG CCCCAGCTCG TTGCCGGCAC GGACCGCGCC 
GTGGCCGAGG CGCGCGCAGC GGAACTCTTG AGCGCCCTCG GCCTCGCCAA GCGTCTCGAC 
CACCGGCCGA GCCAGCTTTC CGGCGGCGAG CAGCAGCGCG TTGCAGTGGC CCGTGCTCTT 
GCCAATCGCC CCGAAATGGT TCTCGCCGAC GAGCCCACCG GCAATCTCGA CGAGGCGACG 
GCCGACCGAG TGCTCGAGGA ATTCCTCAAG CTCGTGCGCG GGGAAGGGAG CGCTGCACTG 
ATCGCCACGC ACAACGAACG CCTTGCGTTG CGCATGGACC GCGTCGTGCG TCTTCACGAA 
GGCGTTCTCG AATAG
 
Protein sequence
MSDPVVRLRE LRRSFSQGGV TIDVLRGVNL EIRPGEIVAL LGPSGSGKST MLQAIGLLEG 
GFSGLIEIAG TDASKLSGDD RTALRRDHLG FVYQFHHLLP DFNAIENVVL PQLVAGTDRA 
VAEARAAELL SALGLAKRLD HRPSQLSGGE QQRVAVARAL ANRPEMVLAD EPTGNLDEAT 
ADRVLEEFLK LVRGEGSAAL IATHNERLAL RMDRVVRLHE GVLE