| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1603 |
|---|
| Symbol | |
|---|
| ID | 3918711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1667939 |
|---|
| End bp | 1670911 |
|---|
| Gene Length | 2973 bp |
|---|
| Protein Length | 990 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640444343 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_496877 |
|---|
| Protein GI | 87199620 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGTT CAGCAACGCG ATCCATTGCG TTCCGCGCAT CCAGCATCGG CGCGATTGCG
CTGGCGCTCG CCGGGCAATC CGCGCTGGCA CAGGACGTCG CTGCCGGCGA TGCCGAGCAG
TCGGGTGAAA TCGTCGTCAC CGGCATCCGC GCCTCGCTCA GCAAGGCTCT CGACATCAAG
CGCACGGCGC AGGGCGTGGT CGATGCGATC TCTGCCGAGG ACATCGGCAA GTTTCCCGAT
ACGAACCTTG CTGAATCGCT CCAGCGCATC ACCGGCGTGT CGATTGACCG TTCGAACGGT
GAAGGCTCGA CCGTCACGGT CCGCGGCTTC GGTCCGGAAT TCAACCTCGT CCTCCTGAAC
GGCCGCCAGA TGCCGACCTC GTCGCTGGGC GACGGGGCCA GCGCGCCGTC CTCTCGCTCG
TTCGACTTCG CCAACCTTGC CTCGGAAGGC ATCTCGGGCG TGGAAGTCTA CAAGTCGGGC
CGCGCCACGC TGCCCACCGG CGGCATCGGC TCCACCATCA ACATCAAGAC CCCGCGTCCG
CTAGACCGTC CGGGCCTGTC GGGCAGCCTC GCGGTTCGTG GCGTTTATGA CAGCTCGCGC
AACGAAGGCA ATCCGATCAC GCCGGAGGTT TCCGGCATCG TCTCGGATAC GTTCGGCGAT
GGCGTGTTCG GCATTCTCGT CACCGGCACC TGGCAGAAGC GCAAGGCCAG CGTGAACCAG
GCGAACGTCG GCTGGCGCGA CGGCTATCTC GGTTCGGAAA ACAACTGGGG TTCGCTGCCG
CAGGAAGGCG ATCCGCGTTA CGGCAGCATC ACCAACCGTC CCGGCCCGAA CGACGTCTAT
CAGGTCCAGC AGAACGCCAG CTACGATCTC AACGACATCG ACCGCGAGCG GCTGAACGGT
CAGGTCGTGC TGCAAGCTCG TCCGACCGAC AGCCTGACCG CGACGATCGA CTACACTTAT
TCGCGCAACA CCGTGCAGGT GCGCAATTCG AACGTCGGCG TGTGGTTCAA CTTCAACGAC
GTTTCCAGCG CCTGGACGGA CGGTCCGGTT GCTGGCCCGA TCTTCTATTC GGAAAAGTTC
GGGGCGGGCG AAGGCAAGGA CTTGTCCTAT TCGGGCTCGC TCACCGAGAA CCGCTCGGAA
AACAAGTCCA TCGGCGGTAA TCTTCAGTGG AAGGGGCCGG GCGGCCTGCG CCTCGAACTC
GATGGTCATC ATTCGACGGC CGAATCCGGT GCCAACAATC CTTATGGCAC CAGCACTTCG
GTCGGTACGG CGGTCTTCGG AATCAAGCAG CAGACGGTCA ACTACGAGAA CGACCTCCCG
GTCATTTCGG TCGTCATGCA TGACGGCATC GACCCGCTCA ACGCCGCGAA CATCCAGGCC
ACCGGCAATG CGTTCCGCAA CGCCTATTTC AAGGACACGA TCAACGAGGT CCAGTTCCGC
GGCGGTTACG ACTTCGACAA CTCGATCCTC GACAGCCTCG ATTTCGGCGT GACCTATGTC
GAGAACAAGG TGCGTTCGGC CTATGGCTTC ATCCAGAACG ATACCTGGGG CGGGTCGACC
ACGAAGGAGC AGCTCCCGGA CGACCTGTTC ACGCTCGAAT CCCTGCCTGA CAAGTTCAAG
GGTGTCTCGG GTGCCAGCGA CCCGGCGATG ATCCAGAGCT TCTACCGCTT CAACTTCGAG
AAGATGGTCG GCTTCCTCGA CGACCTGAAC GGCATCTGCG GCGGCGATGG CGATTGTCGC
GCGCCATTCA CGGTCGACCG GCGCATCCGC GAACGGACGC TGGCGCCCTA TGCTCAGGCG
AACCTGACCT TCGACCTGCT CGAAAACCCT GCGCATTTCC GCGCCGGCAT TCGCTACGAA
AAGACGAAGA TCACCTCTTC GGCGCTCGTG CCGATCCCGA CCGGCACGCA GTGGGTGGCC
GCGAACGAAT TCAACCTCAC CTACGGCAGC GGATCGGACT TCACCACGTT CAAGGGTGAA
TACGAGAACT GGCTGCCCGC GTTCGACTTC GACTTCGAGC CGATCGAGAA CGTCAAGGTC
CGCGCGAGCT ACAGCCACAC CATCACCCGG CCCGACTATG CCTCGATGCA GGGCGGCCGT
ACGGTGGACC AGCTCTTCCG CATCGGTGGC GGCTTCGGCA GCCAGGGCAA CCCGGGCCTG
CTTCCCTTCA AGTCGAAGAA CATCGACGTG TCGGCGGAGT GGTACTACGC CCCGGCCAGC
TACCTGTCGG TCGGTTTCTT CGACAAGCGG GTGAGGAACT TCATCTCGAG TACGCGGGTT
GACACCGAGG CGTTCGGGCT GACCAATCCG GCCGATGGCC CGCGTTACCA GGCCGCCGTG
GCCGCACTTG GCCCCAACGC CAGCACGACC GCGATCCGCA ACTACATCTT CGCCAACTAC
CCGTCTTCGG TGGTCGTCGA CAGCTACGAC CCGGTCACCG GAAACTACAC CGGCAAGATC
CTCGGTCTGC CCGAAGACAA CAAGGTGAAC TTCCAGATCA CCACGCCGAT CAACTCGGAC
CAGGCGGCAC ACCTCTATGG TTTCGAGTTC GCCGTGCAGC ACAGCTTCTG GGATACCGGC
TTCGGCGCGA TCCTGAACTA CACCGTGGTC AAGGGCGATG CGAAGTACGA CAATTCCCAG
CCGTCCAGCG TGCCGCAGTT CGCGCTGACC GGCCTTTCGG ACAGTGCCAA CGCCGTCCTG
TTCTATGACA AGAACGGGTT GCAGGCGCGC GTCGCCTACA ACTGGCGCGA CAAGTTCCTC
GCCGGCACGG GCCCCAACCC GTACTATGTC GAGGCCTATG GCCAGGTCGA CGCAAGCGCG
AGCTATGAGT TCCGCAAGGG ATACACCGTG TTCGTCGAGG CGATCAACCT TACCGGCTCC
AGCCGACGGG GGCACCTGCG CAGCACCAAC AACGTGTTCT TTTCGTCGCC GGGCTATGCC
CGCTACCAGG CCGGTTTCCG CTTCAATTTC TGA
|
|---|
| Protein sequence | MKSSATRSIA FRASSIGAIA LALAGQSALA QDVAAGDAEQ SGEIVVTGIR ASLSKALDIK
RTAQGVVDAI SAEDIGKFPD TNLAESLQRI TGVSIDRSNG EGSTVTVRGF GPEFNLVLLN
GRQMPTSSLG DGASAPSSRS FDFANLASEG ISGVEVYKSG RATLPTGGIG STINIKTPRP
LDRPGLSGSL AVRGVYDSSR NEGNPITPEV SGIVSDTFGD GVFGILVTGT WQKRKASVNQ
ANVGWRDGYL GSENNWGSLP QEGDPRYGSI TNRPGPNDVY QVQQNASYDL NDIDRERLNG
QVVLQARPTD SLTATIDYTY SRNTVQVRNS NVGVWFNFND VSSAWTDGPV AGPIFYSEKF
GAGEGKDLSY SGSLTENRSE NKSIGGNLQW KGPGGLRLEL DGHHSTAESG ANNPYGTSTS
VGTAVFGIKQ QTVNYENDLP VISVVMHDGI DPLNAANIQA TGNAFRNAYF KDTINEVQFR
GGYDFDNSIL DSLDFGVTYV ENKVRSAYGF IQNDTWGGST TKEQLPDDLF TLESLPDKFK
GVSGASDPAM IQSFYRFNFE KMVGFLDDLN GICGGDGDCR APFTVDRRIR ERTLAPYAQA
NLTFDLLENP AHFRAGIRYE KTKITSSALV PIPTGTQWVA ANEFNLTYGS GSDFTTFKGE
YENWLPAFDF DFEPIENVKV RASYSHTITR PDYASMQGGR TVDQLFRIGG GFGSQGNPGL
LPFKSKNIDV SAEWYYAPAS YLSVGFFDKR VRNFISSTRV DTEAFGLTNP ADGPRYQAAV
AALGPNASTT AIRNYIFANY PSSVVVDSYD PVTGNYTGKI LGLPEDNKVN FQITTPINSD
QAAHLYGFEF AVQHSFWDTG FGAILNYTVV KGDAKYDNSQ PSSVPQFALT GLSDSANAVL
FYDKNGLQAR VAYNWRDKFL AGTGPNPYYV EAYGQVDASA SYEFRKGYTV FVEAINLTGS
SRRGHLRSTN NVFFSSPGYA RYQAGFRFNF
|
|---|
| |