| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1540 |
|---|
| Symbol | |
|---|
| ID | 3917215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 1589321 |
|---|
| End bp | 1590565 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640444281 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_496815 |
|---|
| Protein GI | 87199558 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCGC GCATTTCAGA CAATCCCACG GTGCCCGTCC GCGAAAACTG GCTGCTGCTC
ATTCCGCTGG CACTCGCCGG CTTCGTCCTC ATCGGCGGCA TGCTCGTCTC GCTGACCGTC
TATACCGCGG TCATGCAAGC AAGGTTCGGG TGGAACGAGA CCGAGCTAGG CGCAGGGCCC
GTTGCGCTTC TGCTGGGCAT GAGTGTCGCA AATCTCGCGG TCGGCCCGGC CATGCAGCGT
CTCGGCGTGC GGGCGATTTT CGCCGGCGGT TGCCTGGTTG CCGCCGCCGG ATGGGCGGCG
GCGGGATCGG TCACCCAGCT TTGGCAATTC ATGGTAGCAA TGGGCCTTGC CGGTTTTGGC
GCAGGTGCGG CGACGATCGT CCCCGGTATC GCCGTCATCA CCAGCGCGTT CCGCAAGAAC
AGGGGCTTGG CCATCGCACT GTTCATCGGA AGCTGTGCTC TTGCCAGTTC GGCGATGCCG
ATCTTCACCG CATACCTGAT CGAAACCGTG GGCTGGCGCA CCGCCTTCCG GATCGTCGGC
ATGGCTGGTG TGCTGCTTTG CCCGCTGCTC GTGCGCTTCC TGCCCGGCAC GCTCTCGATC
GGCCAGCACG ACGAATGCAT CGATCCCGGC GACGCGGCGC GCCGGCCCCG AACCGCCGCA
CTGCGGCTTC CTGCCTTCTG GATATTGACG GCCGCATTGA CCGTCAGCCA ACTGTGCATG
AACGGTGTCC TGTTCAATAT CGTCGCCTTT CTCCGCAAGA ACGGCCTGAC TGACAGCGCG
GCGGTCGACC TCTACAGCCT CACCAATTTC ATGAGCCTGC CCGGCCTTCT GATCGGCGGC
CTTCTTTCCG ATCGCGTTAG CGCCCACAGG CTCCTTCCCG CTATCGTCGC AGTGCAGGCT
CTCGGGACCT TCGCCTTGCT TGGCATCGGT CACCAAGGGG CGCTTGGACT TTTCGCGACG
ATCGGCTTCG TCGTTTTTTG GGGCGGCGTG GCAGGCCTTC CGTCGCAATC CGCGTCGCTG
CTTCTGGGCG AATTGGTAGG CCCGCAAAGC TTTGCCTCCC TGCTCGGCAT CGTCTTCACC
ATAAACGGCT TCGTAGGTGC CCTCGCCCCC GTACTGACTG GCTGGCTGCA TGACGTAAGC
GGAAGCTACG TCCTGCCATT TGGCCTGTTC GCCGCGTGCC TTCTGGCGGC GGCCCTTGCC
TGTCGCCTTG GCTCCATGAG CCAGCCCAAT TCCATGCATG CGTGA
|
|---|
| Protein sequence | MHARISDNPT VPVRENWLLL IPLALAGFVL IGGMLVSLTV YTAVMQARFG WNETELGAGP
VALLLGMSVA NLAVGPAMQR LGVRAIFAGG CLVAAAGWAA AGSVTQLWQF MVAMGLAGFG
AGAATIVPGI AVITSAFRKN RGLAIALFIG SCALASSAMP IFTAYLIETV GWRTAFRIVG
MAGVLLCPLL VRFLPGTLSI GQHDECIDPG DAARRPRTAA LRLPAFWILT AALTVSQLCM
NGVLFNIVAF LRKNGLTDSA AVDLYSLTNF MSLPGLLIGG LLSDRVSAHR LLPAIVAVQA
LGTFALLGIG HQGALGLFAT IGFVVFWGGV AGLPSQSASL LLGELVGPQS FASLLGIVFT
INGFVGALAP VLTGWLHDVS GSYVLPFGLF AACLLAAALA CRLGSMSQPN SMHA
|
|---|
| |