| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1489 |
|---|
| Symbol | |
|---|
| ID | 3916154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 1530312 |
|---|
| End bp | 1532891 |
|---|
| Gene Length | 2580 bp |
|---|
| Protein Length | 859 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640444231 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_496765 |
|---|
| Protein GI | 87199508 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA TTACATCCAC AGCATTGGCC ACGATCTTCG CCATGGCGGC ACCCGCCCAC
GCGCAGGAAC AGTCGGTCAC CGAGGAAGAT TCAGGCGGAA TCGCGGAAAT TGTCGTCACC
GCGCAAAAGC GCGTGGAGAA CGTACAGGAC GTGCCCATCG CCATTTCGGC CTTCACCGCC
AACTCTCTGA AGGAACGCGC CGTCGGCGAT GTATCCTCGC TGGCCAACAT TTCGCCGAAC
GTCTCGCTGG ATGCGGGCAC GCCGTTTTCC GGCTCAACCT CGGTGCTGTC AGCCTATATC
CGCGGCATCG GCCAGAATGA TTTCGCCGCC AATCTCGATC CCGGCGTAGG CGTATACCTG
GATGGCGTAT ATCTCGCTCG CACCGTTGGC GCGAACCTTG ATCTGCCCGA TGTGGAGCGG
GTCGAAATCC TGAAAGGCCC GCAGGGCACG CTGTTTGGCC GCAATACCAT CGGCGGTGCG
ATCTCGATCG TGACGCGCAA TCCCGGCAAG GAACTGTCGT TCAACGGCGA CATCACCACG
GGCCGGTACA ACCGCCTGGA CGTCAAGGGT ACGGCCAACA TCCCCATTAC CGAAACACTG
GGCGCCAGCC TGACGTTTTC GAGCAAGGAC CGGGACGGTT TCCAGCAGCG GGTCGACTAT
CCCGGTGCTG GCCGCTTCGT GAACGACGTC GATCAGGCCT TCCGATCGAA CTATTATCAG
GGCGCGAACA GCAACGGTGG TTCAAACGAA TGGACGGTGC GCAGCAAATT ACGCTGGGAA
GCCAGCAGCC GCCTTCGCCT GACGCTTTCC GGCGACTATT TGCGGCAAGA TCAGGCCGCG
ACCGCCAATA ATGTGCTCGC CGTAACCGCC AATGATCCCG GCCCGTTTGC ACCCACCGCT
GACCGCGCTC TGGTCATTCC CGGGCTTGGA GCGACCGCCC TTTACGACGC TTCGTCCGGC
CTTGCCCCCA ATGGCTTCAA CTTTGCCGGC CTTTACAACT TCTGCATCGG CTCGACCGGA
GCCGAGATCG CCGCGCGAAA TGCCACAGCC CTGTGCGGCC CGCGCGGAAC GCCTCTCAAC
CCTGGGCAGC AACTGGGCGG ACTTGCCAGC GTCAACGTCG ATGGCGACCC GAACAACGAC
CGCTTGCCGA TCGACAATCG CTGGGTAACC ACGGATCCTG ACAAGACTTA TGCCACCGGC
AACAGCTATT CCAAAATGAA GAACTGGGGC ATCGGCGGGA CGGTAGATTT CGATCTTTCC
GACAGCATCT CGCTGAAGTC GATCACCAGC TATCGCAAGA TCGATTGGAG CAGCGGACTG
GATGCGGACA ATGCGCCTAT CCGCATCCTG GAATTCGCAT TCTCGCTGCG CCAGTGGCAA
TTCAGTCAGG AATTTCAACT GACGGGGCAT GCCTTCGACA AAAAACTAAA CTACGTTTTG
GGCGCCTATT ATTTCAAGGA AAACAATGAT CTGAACGACT TCGTGACGTT CAATCAGGGA
CTTTTGCAGA TCGCCGGGCC AAACAAGCTG AAGACCAAAA ATTACGCGTT CTTCGGGCAG
GTCGATTATC GCCTCAACGA TCTGATCGGC ATTACCGTGG GCGGGCGCTA CACGCACGAA
GACAAGGGCA TCAATGGTGG TCAGAGCGAC CTGAACGGTT TCAACTATAA ACTGTTCAAC
TGCCCGGTTT TCGGCGATCC TTGCTCGACT CCCCTTGGAT TTACCAACCC GTCGCAACCG
CTGCGCTATT ATGTGACGCC AACCCAGAAC AAGTCGTTCA GCAACTTCTC GCCCAAGTTC
GGGCTTCAGT TGCACCCAGC CGATGACCTC ATGATCTATG GGTCATTCGC CAAAGGCTAC
AAGACCGGCG GCTGGACCAC GCGGCTTTCC AACCCGCTGC CTTATGCCCC CAGCTTCGAT
GAGGAAAAGG CAGAAAGCTT TGAAGTAGGC TTGAAATCGA CGCTGCTTGA CCGCCGCTTG
CAGATCAATG CCGCTGCTTT CACCACCAAG TTCGACGGCA TCCAGTTGAA CTTCCAGCAG
GGCGTATCGC CGACAATCCA GAACGCTGGC ACCGCGCGGA TCAAGGGCTT TGAAGTTGAA
CTGACCGTAG CTCCGATCCG AAACTTCTCG GTCGCCACTT CGGTCGGATA CACTGATGCC
TATTATACCT CCGTGCTGCC CCAGGCGATC GTCGCGCCCA ATTCGCATCA GGCAGGTACG
GCAATAGGCG TATCATTGCC AAAAACCCCC AAGTGGAAAT TTAACGTCAG CCCCCGCTAT
GAAGTATCTC TGGGCGCGGC GGGATCGCTG CTCCTGCTGG CTGACTACAC CCACACGTCA
TCGCAATGGA ATGATACAGA ACGCACCCTA ACCTTGCTGC GCCCAGCGAC CGACCTTCTG
AACGCCAGCG CAACCTACAA AGCCATGAAT GGCGTGTGGG AACTGACAGC TGGCGGTACC
AATATTACCA GCGAGCGCTT TCTGACGTCT GGGGGGACCC AACAAAACGG CGCAGGGATC
ATCTTTGGAA CGCCGAACCG TCCCGCCGAA TGGTATCTTC GCTTTGGCAT GAAGTTTTAA
|
|---|
| Protein sequence | MKLITSTALA TIFAMAAPAH AQEQSVTEED SGGIAEIVVT AQKRVENVQD VPIAISAFTA
NSLKERAVGD VSSLANISPN VSLDAGTPFS GSTSVLSAYI RGIGQNDFAA NLDPGVGVYL
DGVYLARTVG ANLDLPDVER VEILKGPQGT LFGRNTIGGA ISIVTRNPGK ELSFNGDITT
GRYNRLDVKG TANIPITETL GASLTFSSKD RDGFQQRVDY PGAGRFVNDV DQAFRSNYYQ
GANSNGGSNE WTVRSKLRWE ASSRLRLTLS GDYLRQDQAA TANNVLAVTA NDPGPFAPTA
DRALVIPGLG ATALYDASSG LAPNGFNFAG LYNFCIGSTG AEIAARNATA LCGPRGTPLN
PGQQLGGLAS VNVDGDPNND RLPIDNRWVT TDPDKTYATG NSYSKMKNWG IGGTVDFDLS
DSISLKSITS YRKIDWSSGL DADNAPIRIL EFAFSLRQWQ FSQEFQLTGH AFDKKLNYVL
GAYYFKENND LNDFVTFNQG LLQIAGPNKL KTKNYAFFGQ VDYRLNDLIG ITVGGRYTHE
DKGINGGQSD LNGFNYKLFN CPVFGDPCST PLGFTNPSQP LRYYVTPTQN KSFSNFSPKF
GLQLHPADDL MIYGSFAKGY KTGGWTTRLS NPLPYAPSFD EEKAESFEVG LKSTLLDRRL
QINAAAFTTK FDGIQLNFQQ GVSPTIQNAG TARIKGFEVE LTVAPIRNFS VATSVGYTDA
YYTSVLPQAI VAPNSHQAGT AIGVSLPKTP KWKFNVSPRY EVSLGAAGSL LLLADYTHTS
SQWNDTERTL TLLRPATDLL NASATYKAMN GVWELTAGGT NITSERFLTS GGTQQNGAGI
IFGTPNRPAE WYLRFGMKF
|
|---|
| |