| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0787 |
|---|
| Symbol | |
|---|
| ID | 3915840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 834388 |
|---|
| End bp | 836754 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640443517 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_496066 |
|---|
| Protein GI | 87198809 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.114604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA CCAGGAAGAC CCGGCTCGTC CAGTCGGTAT CGGTTGCAGC CATTGCGCTG
TTCTCGTCAG TACCCGCATT CGCCCAAGCC GCCGACGAAC CGGCGGCGGC TCCCGGCGAA
ATCATCGTTA CCGCACAGCG CCGCAGCGAG AACGTGCTCA AGGTCCCGGT CAGCGTCACC
GTGGTCAGCG CAGATCAACT GATCCAGCGC GGCGCCAATG ACCTCACTGC TGTGACCAAG
CTCGCGCCGA GCCTTCAGGT GGCGCAGGAC AACACCTTCT CGGTGCGCGG CGTCGGCACG
GCAACTTTTG CCAACACCGT TGAAGCCAGC GTCTCGCAGG TCGTGGACGA TGTGGTTCTG
GGCAACCGCG AATATGCGGC CAACGCGTTC TACGACGTGG CGCGCGTCGA AGTCCTGAAC
GGGCCGCAGG GCCTGCTGTT CGGCAAGAAC GCCTCTGCGG GTCTGGTCAA CATCACCACC
AACAAGCCCA AGCTTGGCGA GCTGTCCTTC AGCGCCGATG GCGAGCTGGT GCAGCGTGCC
CGTCCCGGCG ACGATGGCAC CGGCTACCAG ATCCGCTCGA CCGTCAACGC ACCGCTGGGC
GACAAGGCTG CGCTGCGGCT CAACGCGATC TACAGCGATC AGGACCCGAT TACCGTTTCC
AGGGTCAACC CCGCGATGCG CAACGACCTC GGCCTCACCA ACCTCGGCCT GCGCGCCAAG
CTGCTGTTCG AACCGACCGA CAGCCTCTCG GTCTACTTGA TCGGCGACTA CAATCGCCAG
CGCGGCATCA CCGGCCGTTA CGACATCACC TTCCGCCAGT TCGGCCCCGG CAGCCAGTAC
CCCGCCTATG GCCTTGCTGC TGGTCCGGAG AACTTCAACT TCGCCGCAGA AGCGCCCAAT
TACCGCGACA GCGATACCGG CGGTCTTCAG GCCAATGTCA GCCTGAAGCT CGGCAACGGC
ATGGAGCTGA CCAGCATCAC CGCGTGGAAG CAGGCCAAGA CCGACTTCCA GTTCGACTCC
GACGAAACGG CAATCAACTT CTTCAGCTAC AACAGCGCTG ACCAGAAGTA CGACCAGTAC
TCGCAGGAAC TGCGCCTTGC GCTGCCGACC GGCAATGCAC TGACCGGCCA GTTCGGCCTC
TACTACTACC GCTCGGTCGG CAACAGCTCG GGCTTCCGTG GCGGCAACAA CGGTCTGCCC
GATGTCGTCG CGATCGGCTT CCCGTTCTGC ATCGGCGCCA CCGTCACGCA GGGACCGCCG
CCGGCCTGTG GCGTCAACAA CCGCTCGTTC CTCGGCCAGG ACTTCCAGTA TAGCCTCAAG
AACGACAGCT ACGCCGCGTT CGGCCAGCTC GGCTACCAAC TGACCAATAC CTTGAAGGTC
ACCGCCGGCG CTCGGCTGAC TTACGAAAAG GCGAAGATCA ACCTGCGCGA GAACTTCGGA
AACTACTTCG TCACCCTCGG CATCAAGAAC AACGTCGCCA ACCAGGCCAC CGACGCCACG
GACCTCAGCT ACAAGCTGGG CTTCGACTGG CAGGCAACGC CCGACCTGAT GGTCTATGGC
TTCTACGGCG AAGGCTTCAA GGGCCCGGGC TTCTCGAACA CGGCTCCTGC TCCCGGTGCC
GATCTGTCGG TTCGTCCGGA AATCTCGCGC GGCGGTGAGC TTGGCGTCAA GGGCAAGGCA
CTCGACGGCG CGCTGACCTT CAGCCTCTCG GGCTTCTACA CGAAGTTCTA TGACCTCCAG
GTCCAGGCCT TCGTGCAGGC GCTGCGCACC TTCGTTCTGG GCAACGCGGC CACGGCAACG
ACCAAGGGCA TCGACTTCTC GTTCCAGGCC CGGCCCTTCG AAGGCCTGAC CTTGTCGGGT
TCGGCATCCT ATGCCGATGC CACGTTCGAC GACTACCCGG GCGCCCAGTG CTACCCGACA
CAGGCGACCG GTGGCTGCAA GGCGGATATC AACTCGTCGC TGCCAGGCTT CGTCGGCACA
TTCAACGCCA AGGGCTATCA GTTGCCGCTG TCGTCCAAGT TCACGGCGAC ACTTGGCGCT
GAGTATGCCG CTCCGATCAC GGACGGTCTA GAGGCGCAAT TCGGCGTTGG CTACTACCAT
CGCTCGTCAC AGTCGGCCGG CATCGGTGCC CCGTTCACCA TCCCGACCTG GGACACGATC
GACCTGCGCG CCGGGATCAA GGCCGAGAAC TGGAACATCA GCCTGTTCTG CAAGAACTGC
ACGAACGAGA TCCGCCCGAT CTCGATCGGG TCTGACGGCG GCGATGCCAA CCCTGTTGGC
GTCGCTCCGC CAGTGCTGAC GTTGAACCAG CGCTTCAGCT TTGAATCCGT CCGCACCATC
GGCGTGCGTG CCGGCATCAA CTTCTGA
|
|---|
| Protein sequence | MNITRKTRLV QSVSVAAIAL FSSVPAFAQA ADEPAAAPGE IIVTAQRRSE NVLKVPVSVT
VVSADQLIQR GANDLTAVTK LAPSLQVAQD NTFSVRGVGT ATFANTVEAS VSQVVDDVVL
GNREYAANAF YDVARVEVLN GPQGLLFGKN ASAGLVNITT NKPKLGELSF SADGELVQRA
RPGDDGTGYQ IRSTVNAPLG DKAALRLNAI YSDQDPITVS RVNPAMRNDL GLTNLGLRAK
LLFEPTDSLS VYLIGDYNRQ RGITGRYDIT FRQFGPGSQY PAYGLAAGPE NFNFAAEAPN
YRDSDTGGLQ ANVSLKLGNG MELTSITAWK QAKTDFQFDS DETAINFFSY NSADQKYDQY
SQELRLALPT GNALTGQFGL YYYRSVGNSS GFRGGNNGLP DVVAIGFPFC IGATVTQGPP
PACGVNNRSF LGQDFQYSLK NDSYAAFGQL GYQLTNTLKV TAGARLTYEK AKINLRENFG
NYFVTLGIKN NVANQATDAT DLSYKLGFDW QATPDLMVYG FYGEGFKGPG FSNTAPAPGA
DLSVRPEISR GGELGVKGKA LDGALTFSLS GFYTKFYDLQ VQAFVQALRT FVLGNAATAT
TKGIDFSFQA RPFEGLTLSG SASYADATFD DYPGAQCYPT QATGGCKADI NSSLPGFVGT
FNAKGYQLPL SSKFTATLGA EYAAPITDGL EAQFGVGYYH RSSQSAGIGA PFTIPTWDTI
DLRAGIKAEN WNISLFCKNC TNEIRPISIG SDGGDANPVG VAPPVLTLNQ RFSFESVRTI
GVRAGINF
|
|---|
| |