| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0345 |
|---|
| Symbol | |
|---|
| ID | 3918229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 369514 |
|---|
| End bp | 371550 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640443074 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_495627 |
|---|
| Protein GI | 87198370 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCAAGA CCATTACTAC CAGCAGCGCC CTTGCGCTGA TCTGTATCGG AAAACCGGCA
TTTGCCGAAA CCTCTGAAAA GGCATCGCAA ACAAGCGCGG ATGCAGTCGT GGCGGGTAAC
GACATTGTGG TTTTCGGTCG CGGTGAGGCC ATGATCGGCA CTGCCAAATC AGCGAGCGAA
GGAAGCGTCG GAGGGGCCGA TCTCCTCGTG CGGCCTCTTC TCCGCGTGGC CGAACTGCTG
GAAGCGGTGC CCGGGCTGGT TGCAGCCCAG CATTCTGGGA GCGGCAAAGC CAACCAGTAT
TTCCTGCGCG GTTTCAACCT CGACCATGGG TCTGACTTCA GTACCTATAT CGATGATGTG
CAGATGAACT TTCGTACCCA CGGACATGGT CATGGCTATC TCGACCTCAA CGGCCTCATT
CCGGAGATCG TGGGCCGGGA GGATTTTCGT AAAGGGCCCT ACCGCGCCGA TGGCGGTGAT
TTCGCTCTGG CGGGAGCAGC CTATATGACG ACCATCAAGG GTTATGACCG GCCATGGGCA
TCGGCCGAGA CTGGTTCATA TGGTTGGCGC CGCGTCGCTG CGGGTGGAAC ATTGCACGAC
CTGGGCGGCG GAGACCTCAC GCTTGTCGCC CAGGCCAAGG CCTATGACGG ACCGTGGCAG
GAACCTGAAC GTCTGCGCCA TTACTCGGGG TTCGCGAAAT ATAGCATGCC GACCGGTGCG
GGCACATTGG AGGCATCTCT CCATGCCTAC CGGGCGACAT GGCACCCAAC CGAGCAAATC
CCCGAGCGCA TTATCGGCAC GGCGTTGTGT GCGGATGTGT TCTGCTCTCC AGATCCTTCC
GCGCGGGGTG AGACGACGCG CCTGGTGGCT AACATCGCGG TCAAGCAACC GACATGGCGC
GCCAATGTCT ATGCCCAGTT TTACGACTGG TCGATGTTCT CGAACCCCAC TTACACCGAT
CCGGATGGCA CAAGCGCGCA GATCAAGCAG TTCGACCGGC GTTGGGTCCT CGGGCTGTCC
GCACAAAAAC ATTGGGAAAT CGCTGACAGT CTGGCTGTGA GCCTTGGCAC CGAAAACAGA
TACGACGCCG TCGGGAATGT TGGTGTCGAT CGAACGGCTG CCCGCGCATT TCTTGAATCT
CTCGGGCACT TTCGGGTCGG GGAATTGTCT TCCGCGCTCT ACGGCGAAGT CGCTTGGAAA
CCCTTGGCGG GACTGCGTGT GACAGGTGGT CTTCGCGGGG ACTATTATCA CTATTCCGTG
CGTGCACGAG ATTCTGTTGC GGCGTCGCTG GGCGAAGGCA GTGGCTCAGC GTCGATTCTC
TCTCCCAAGG CGTCAATCGC CTATCAGGTT ACGCCGCATC TTGAACTCTA CGCCAACTGG
GGCCGTGGAT TCCATTCCAA CGATGTTCGG GGTGCGGTCA ACAGGGACAC GCCTGTTCCC
GTTCTGGTTC GCGGCATCGG CAAGGAACTG GGAGGACGCA TTCAATTCTC CGGGGTCACG
TTAACCGCGA CTTACTGGTG GCTGCATGTC GGCAGCGAAC TTCGTTTCAT TGGCGATTCC
AATGCTGTTG AACCGTCGGG TGCCAGTGGG CGTCATGGCT ATGAAATCGT CGCCTTCTGG
CGGCCGTTCC CTTGGCTTGC GCTTGATGGA AACTATACCG CCAGCCATGC GCGCTTCGAC
AATGGCGATC ACATCCCCAA TGCATTTGAG AACGCGGCTT CAGCCGGTGC CGCCATCATT
CTTGATCCCT GGGAAGCCAG CATTCGGGTG CGCCACCTTG GACCTTCTCC GCTTGTCGAG
GACAACAGTG TCCGGGATCG AGGCAGCACC GTCATGAATG CCCGGGCCGC GTGGAAGGGC
AAGAAGGTCG AGATATTTGG AGAAGTGCTG AACATCTTCG ACAGCCGGGA CAAGGACATC
GCCTATTATT ACGAGTCCTA CATCCCCGCC TTCGATGCAG GTGCTCCGGT GGAAGGCCGG
TTGAGCCGCG TGGTCGAGCC TCGAACTGTG AGGATTGGCG CAAAGGTCAA TTTCTAG
|
|---|
| Protein sequence | MIKTITTSSA LALICIGKPA FAETSEKASQ TSADAVVAGN DIVVFGRGEA MIGTAKSASE
GSVGGADLLV RPLLRVAELL EAVPGLVAAQ HSGSGKANQY FLRGFNLDHG SDFSTYIDDV
QMNFRTHGHG HGYLDLNGLI PEIVGREDFR KGPYRADGGD FALAGAAYMT TIKGYDRPWA
SAETGSYGWR RVAAGGTLHD LGGGDLTLVA QAKAYDGPWQ EPERLRHYSG FAKYSMPTGA
GTLEASLHAY RATWHPTEQI PERIIGTALC ADVFCSPDPS ARGETTRLVA NIAVKQPTWR
ANVYAQFYDW SMFSNPTYTD PDGTSAQIKQ FDRRWVLGLS AQKHWEIADS LAVSLGTENR
YDAVGNVGVD RTAARAFLES LGHFRVGELS SALYGEVAWK PLAGLRVTGG LRGDYYHYSV
RARDSVAASL GEGSGSASIL SPKASIAYQV TPHLELYANW GRGFHSNDVR GAVNRDTPVP
VLVRGIGKEL GGRIQFSGVT LTATYWWLHV GSELRFIGDS NAVEPSGASG RHGYEIVAFW
RPFPWLALDG NYTASHARFD NGDHIPNAFE NAASAGAAII LDPWEASIRV RHLGPSPLVE
DNSVRDRGST VMNARAAWKG KKVEIFGEVL NIFDSRDKDI AYYYESYIPA FDAGAPVEGR
LSRVVEPRTV RIGAKVNF
|
|---|
| |