Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_0297 |
Symbol | |
ID | 3916234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | + |
Start bp | 319545 |
End bp | 321041 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640443026 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_495579 |
Protein GI | 87198322 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCTCG GGCCGAGGCT CGATATCCGG CAGACCCAGT CGCTGGTGAT GACGCCGCAG CTCCAGCAGG CGATCAAGCT GCTGGCGTTG TCGAACCTCG AGGTCGAGGC CTTCATCGGC GAGGCGCTGG AGGCCAATCC GCTGCTCGAA ATCGGTGAGA CGGCACCCGC CGAGGCGGTC GACGCCGGCC CCGAAGACCT GCGCCGCACG CATCTCGAAT CCTCGCCGGT AGACCAGCTC GTTGCCGAGG GGCGGGTGGA GGAGGATCGC CCGCTCGACA TCGATGTCAC TGCGCTCGAC CGCGATCGGG ACACCGGGGA TGGCGATTTC GGGGGCGGCA CGCTCGAGTT GTCCTCGACC CGCGAAAGTG GCGGCGGCGA GGGGCCGGAC ATCGACGAAC GGGGGCGCAT CGAGGAAACG CTTGCCGAAC ATCTCCACGC CCAGATCGGC GCGACGACCT CGGACGCGCA GCTCCTCTTC GTCGCCCGCT GGCTGATCGA CCAGCTCGAC GAGGCAGGAT ATCTCGCCAT GCCGATTGGC GAAGTGGCCG AGGCGCTGGG CCTTTCGCCG CTGGTGGTCG AGCGGGCGCT GGCTCTCGTC CAGTCGCTCG ACCCGACCGG GGTCGGCGCA CGCAACCTGG CGGAATGCAT CGCGCTCCAG GCCCGGGAGG CGGACCGCTA TGATCCGTGC ATGGCGCGGC TGATCGACAA TCTGGAACTT GTTGCGCGCG GCGAGATCGC GCGGCTGAAA CGCCTGTGCC AGGTCGACGA CGAGGACTTT GCCGACATGC TGGCCGAGCT GCGCGGCTAC GACCCGCGCC CCGGCCTGCG CTTCGGCGGG GGCGCGGCGG AGCCGGTCGT GCCCGATATC CTGGTGCGCG CGGCAAAGGG CGGCTGGGAC ATCGCGCTCA ATCAGGCGAC CCTGCCGCGC CTCGTCGTCA ATCGCAGCTA CTACGTGGAG ATGCGCGGGG CCTGTGTCGG CAAGGAGGCC AAGGCCTGGC TGGGGGAGAA GCTGGCCGAC GCGAACTGGC TGCTGAAGGC GCTCGACCAG CGGCAGAAGA CCATCCTCAA GGTCGCGGCC GAGATCGTGA AGCAGCAGGA CGGCTTCTTC CGGCACGGCG TCGCGCACTT GCGCCCGTTG ACGCTGAAGA CCGTGGCCGA AGCGATATCG ATGCATGAAT CGACCGTCAG CCGCGTGACT TCGAACAAGT ACCTCCATTG CGACCGGGGT ACCTTCGAGC TGAAGTATTT CTTCACTTCG GGCGTCGGCT CTTCCGACGG TGAGGGCGCT TCGGCCGCGG CGGTGAAGGC TGCGATCCGC CAGCTCATCG ATGCCGAGGA CCCCAAGGCA ATCCTTTCGG ACGATGCCCT GGTCGATCTG CTCAAGGCGC GGGGCTTCGA CCTTGCCCGG CGCACGGTCG CCAAGTACCG CGAGGCGATC GGGCTCGGAA GTTCGGTCCA GCGCCGCCGC CAGAAAACAC TCGCCGGGGT GCGCTGA
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Protein sequence | MALGPRLDIR QTQSLVMTPQ LQQAIKLLAL SNLEVEAFIG EALEANPLLE IGETAPAEAV DAGPEDLRRT HLESSPVDQL VAEGRVEEDR PLDIDVTALD RDRDTGDGDF GGGTLELSST RESGGGEGPD IDERGRIEET LAEHLHAQIG ATTSDAQLLF VARWLIDQLD EAGYLAMPIG EVAEALGLSP LVVERALALV QSLDPTGVGA RNLAECIALQ AREADRYDPC MARLIDNLEL VARGEIARLK RLCQVDDEDF ADMLAELRGY DPRPGLRFGG GAAEPVVPDI LVRAAKGGWD IALNQATLPR LVVNRSYYVE MRGACVGKEA KAWLGEKLAD ANWLLKALDQ RQKTILKVAA EIVKQQDGFF RHGVAHLRPL TLKTVAEAIS MHESTVSRVT SNKYLHCDRG TFELKYFFTS GVGSSDGEGA SAAAVKAAIR QLIDAEDPKA ILSDDALVDL LKARGFDLAR RTVAKYREAI GLGSSVQRRR QKTLAGVR
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