| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0033 |
|---|
| Symbol | |
|---|
| ID | 3916036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 33831 |
|---|
| End bp | 35222 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640442758 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_495316 |
|---|
| Protein GI | 87198059 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0259659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCGC TCCCCATGTT TGAAAAGCCG CCCGTACACT GGACCGAAGA ACTGCGCGCG
ATGCTCCGTC TCGCCGCGCC GATGGTCGGG GCGAACCTGC TGCAGATGGC GGTCTTTGCG
GTGGACGTGG TGTTCGTGGC GCGGCTCGGG CCGGTGGCGC TTGCCGCCTC CTCGCTGTCG
GTGTCGCTCT TCGGCCTTCT CGTCTGGAGC CTCTCGGGCC TTGTCGGCGC GGCATCGCCA
CTGATCGCGG CCGAACTCGG TCGGCGCCGG CACGCCGTTC GCGAAGTGCG CAGAACCGTG
CGCATGGCGG CCTGGGCGGG AACCCTGGCT GGCCTGTTCG CCATGGGCGT CTGCCTGCTC
GGCGGTCCGC TGATGCGCGT CACCGGCCAG CAGCCCGAAG TCATCGCGCT TGCCGTCCCG
TTTCTCAACG TCCTGATGTG GGCGGCGATT CCTTCCACGA TCTCGGCGCT GCTGCGCACC
TTCGTGGCGA CGCTCGGCCG TCCGACGATC GGCACGGTCA TCACCGGCAT GGCAGTGGCC
ATCAACGCCT TCGGCAACTG GGTCTTCGTC TTCGGCAACC TCGGCGCGCC GGAAATGGGG
CTCACCGGCT CTGCCTTGTC GAGCATAGTC ACGACCTGCG CGATGGTCCT GGCCTATATC
GTGGTGATCC GCTCCGACCG CCGCCTGCGT CGCTACAGGC TGGCCGGCCG GTGGTGGAAG
CCGGAGTGGA AGCGTTTCGC CGACGTGCTG CGCGTGGGCC TGCCGATCAC CGGCACGATC
CTTGCCGAGG CGGGGATGTT CAACGGCGCC GCCTTCCTGA TGGGACGCAT CGGCGAGGTC
GAGCTTGCCG CCCATACGAT CGCCCTCCAG TTCGCCGCAA TCGCCTTCCA GGTGCCGTTC
GGTGTCGCCC AGGCTGCGAC CATCCGCGTG GGCCTGGCCT TCGGTGCTGG CGAGCGGGCC
GCCATCGCCC GGGCAGGCCG GGTCGCCGTC GTGCTCGGCA TGGGCTTCAT GGTGGTGACC
GCCAGCATCA TGCTCTTCGC CCCGCGCGCG ATCCTGCATC TCTACGTCGA TCCCGACGCG
CCCGAAAACC GCGCAATGGC CGTCCTCGCG GTGCAGTACA TGGCGGTTGC CGCAGCGTTC
CAGTTGTTCG ACGGCGCGCA GGCCGTGGGC GCTGCCCTGC TGCGGGGCCT GCAGGACACG
CGTATTCCCA TGGCCTTCGC CCTGTTCGGC TACTGGCTGC CCGGGCTGGG GACGGCCGTC
GGCCTCGGGC TCTTCTCTCC GCTCGGCGGG CTGGGCGTAT GGATCGGCCT CATGGTCGGC
CTCGTCGTCG TGGCCAGCCT CATGCTATGG CGTTGGCGGA ACCGTGCGCG ACTGGGCCTC
CTCCCGGCCT GA
|
|---|
| Protein sequence | MAPLPMFEKP PVHWTEELRA MLRLAAPMVG ANLLQMAVFA VDVVFVARLG PVALAASSLS
VSLFGLLVWS LSGLVGAASP LIAAELGRRR HAVREVRRTV RMAAWAGTLA GLFAMGVCLL
GGPLMRVTGQ QPEVIALAVP FLNVLMWAAI PSTISALLRT FVATLGRPTI GTVITGMAVA
INAFGNWVFV FGNLGAPEMG LTGSALSSIV TTCAMVLAYI VVIRSDRRLR RYRLAGRWWK
PEWKRFADVL RVGLPITGTI LAEAGMFNGA AFLMGRIGEV ELAAHTIALQ FAAIAFQVPF
GVAQAATIRV GLAFGAGERA AIARAGRVAV VLGMGFMVVT ASIMLFAPRA ILHLYVDPDA
PENRAMAVLA VQYMAVAAAF QLFDGAQAVG AALLRGLQDT RIPMAFALFG YWLPGLGTAV
GLGLFSPLGG LGVWIGLMVG LVVVASLMLW RWRNRARLGL LPA
|
|---|
| |