| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4522 |
|---|
| Symbol | |
|---|
| ID | 3912339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 5109767 |
|---|
| End bp | 5111212 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637886426 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_488116 |
|---|
| Protein GI | 86751620 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.909404 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTATTTT CGACTCATGG AGATCAAAAC GTTCATGTTC CTGGAGACAG GTTCGAGGCT
TTAGGCTTGG CGGACCTAAG GCGAATTCGC TTCTCAGGCA GGGCTCAATC AGAACAGACC
TTCGCAGGCA ACTTCGTTGA GTGCCTTTTC GACGGCGTCG AGCTTGACAA GATCAACTTC
TCGAATTGCG ACTGGAAGGA TTGTCGAGTT TACAATACCA CTTTTATCGA CTGCGAACTG
GGCGACGCGT CATTCATTAC AAACCTGTTC GATCAGTGCA GCTTTATCCA ATGCAAGTTT
CCAAATACTG GGATCAGCGA TTGCAGCTTC CGCAATTGTG TTTTCGAGGA CTGTGATCTC
AGCAACATCG TAATGAAGTC AAATCGAATC GAGCGATCTC GATTCAGTCG ATGCTCAACT
TCAAACAGGG TCATTGAGAG TAGCTTACTC ATTGACACCT CTTGGAGTGG TATGAATTTG
GAAGTTGGTC TGATCCTTGG AAACTTCGGT CTCGAGCGGT CTAATGTTCA GGCCTGCGTA
CTGTTCGAAA AACAGCCTGA CCGCAGCTTG CGGGAAATCA CTTGGTCTGA CCTCGGTCGT
ATAGGAGGTC ACCGGCCACT GAGCCCCATC GAAACATTCC GTTTGGCATT CTTTGAGACC
GGGGACGCAG ACGGAGATCC CGACGCACTT GAACAGGCAA TCAATCCACG AAATTGGACC
AGCGAGGCGA TTATAGAGTC GAGCTTCGGA GCTCTACTGA ATTCGTTTGC TCAATTTTTG
CTGGCGCTAT TCGCCGCGAA CCGTTTACCC GTCTATGGTC TACTCCGCTT TCACACTCAT
AATTTTGCAC TACTGGAATG GCTGTCAGGG AAGCCCGAGT TTTCATCCCT TTATCAATCT
GCCGCGGGCG TCCATCTTTC TGTGACTCGG GAAGTTGACG CTTACGCTAG AGCAGTTCAG
GAAATAGTCG ACGCTCATAC AAACTTGCTC CATATTCGAC TTGAAGCAGA TGGCCCCCTG
GATCCTAGCT ATTACGAATC GCTCTTTCGT GAAGCCGATG GCGGGCAGAT TCGGGTAGAT
TGGGTTCGCC CGCGCAATTC TCCGGTAGAA GTCTCCTTAA ATTTCTTCGA CTATGCAACT
TTGCTGTCGA TAGTCGCTCT CGTACTCGCA ACCCGAACGA AATTTGAACT GTCAAAAATA
CAGTCAATGG GATGGATAGC GTCTCCACCG ACAGGCGATC GAAATGGAGA AGCCGCCAAC
GGCAAGCAAT TGATCGCATT TCGAACAGGC TTCTCTCTCG ATCGTCCCTC TGAGTATGAA
ATTAATGTGC GAACATTACT GCCGCGCTCC TTCCTTTTAG ATCTACACCT TTGCTTGAAC
ATCTCTCTGT TCAAGAGGGT CAGAGGGGTG TTGATTGGAT TGCTACTGCC ACCTAAAGAC
CCTTGA
|
|---|
| Protein sequence | MLFSTHGDQN VHVPGDRFEA LGLADLRRIR FSGRAQSEQT FAGNFVECLF DGVELDKINF
SNCDWKDCRV YNTTFIDCEL GDASFITNLF DQCSFIQCKF PNTGISDCSF RNCVFEDCDL
SNIVMKSNRI ERSRFSRCST SNRVIESSLL IDTSWSGMNL EVGLILGNFG LERSNVQACV
LFEKQPDRSL REITWSDLGR IGGHRPLSPI ETFRLAFFET GDADGDPDAL EQAINPRNWT
SEAIIESSFG ALLNSFAQFL LALFAANRLP VYGLLRFHTH NFALLEWLSG KPEFSSLYQS
AAGVHLSVTR EVDAYARAVQ EIVDAHTNLL HIRLEADGPL DPSYYESLFR EADGGQIRVD
WVRPRNSPVE VSLNFFDYAT LLSIVALVLA TRTKFELSKI QSMGWIASPP TGDRNGEAAN
GKQLIAFRTG FSLDRPSEYE INVRTLLPRS FLLDLHLCLN ISLFKRVRGV LIGLLLPPKD
P
|
|---|
| |