| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4477 |
|---|
| Symbol | |
|---|
| ID | 3912293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 5067091 |
|---|
| End bp | 5067636 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637886380 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_488071 |
|---|
| Protein GI | 86751575 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3154] Putative lipid carrier protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.320227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTAT CCAATTCGTC CGTCTCCAGG ATGCCCGCGC CGCTTGCCCT CGCGACGCGG
GTTCTGCCGC TGTTGCCCCT GCAGGTGTTG CTCGGCATTT GCCTGCGGGA GATCCGCAGT
CGGCATCCCC GCATCTTCGA TCGGCTGGGC TCGCACACCG GCAAGCGCTA CGGCCTCGAT
CCGAGCGATC TGCCGATCGC CTTCGTGCTC GAGCCGCGAC GGATGAATCC GCGCGTCACG
GTGGTGCGCA CGCTGCCGTC GAACATCGAC GCGCGCATCG CCGGTCCGCT GTCGGCGCTG
ATCGGCATGA CCGACGGCTC CTATGACGGC GACGCGCTGT TCTTCTCGCG CGACATCGAG
ATCGACGGCG ACATGGAGGC GGTGGTCGCG CTGCGCAATG CGATCGACGA TTCGCGGGTC
GATTTCCTCA AGGAGTCGGT GGCGTGGTTC GGCCCGCTGG CGACGCCGAT CGAGCGGATT
CTGCGGAGCA TCGTCGGCGC GCAGCCGACC TATCGCGAAG AAATGGGCGT CGGAGGCGGA
GGCTAG
|
|---|
| Protein sequence | MSVSNSSVSR MPAPLALATR VLPLLPLQVL LGICLREIRS RHPRIFDRLG SHTGKRYGLD
PSDLPIAFVL EPRRMNPRVT VVRTLPSNID ARIAGPLSAL IGMTDGSYDG DALFFSRDIE
IDGDMEAVVA LRNAIDDSRV DFLKESVAWF GPLATPIERI LRSIVGAQPT YREEMGVGGG
G
|
|---|
| |