| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4301 |
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| Symbol | |
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| ID | 3912114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4888903 |
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| End bp | 4889910 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637886205 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487899 |
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| Protein GI | 86751403 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.404032 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGC GGATTCGCGA CATGATCACG GCCGGTGCCT GCGCCGCCCT CCTGCTCGGC
GCGGCGGCGA CGCCCGCGGC GGCGGCGACG CTCACGGTGG CGGAGCAGAA GGTCTCGGAC
GAGAAGGCGG TGTTCGCCAC CGTCGAGAGC ATCAGCGTCG TGCCGGCGCG CAGCCGGATC
GGCGGCACCG TGATCGCCCT GAAAGTGCGC GAGGGCGACA GCGTCGCCCG CGGCCAGGAA
ATCGCGACGA TCGGCGACGA CAAGCTGACG CTGCAGATGA ATTCGCTCGA CGCGCAGATG
CAGGCGCTGC TGGCGCAGGC GTCGCAGGCG CAGATCGATT TCGACCGCAC CAGCGGCCTG
GTCGAACGCG GCACGCTGGC GCGCACCAAG CTCGACGAGG CGCGCACCAC GCTCAACGTG
GCCGAGAACA ATCTGCGCGC CAAGACCGCG GAGCGCGCGG TGGTGCAGCA GCAGTTCAAG
GAGGGCCAGG TGCTGGCGCC CGACGACGGC CGCGTGCTGA AGAAGATGGT CGCGGTCGGC
TCGGTGGTGC TGCAGGGCGA TACCATCGTC ACGGTGGCGC AGCAGCACTA CAAGCTGCGG
CTGCGGGTGC CGGAACGGCA CGCGCGGTTC CTCAAACAGG GTGATCGCGT TCGCGTCGAC
GGCGCCGAGT TCGGCGACCA CACGGCGAAG TTCGGCACGA TTGACCTCGT CTACCCGCTG
ATCGAGGACG GCCGCGTCGT CGCCGATGCC TCCGTCGAGG GGCTCGGCCA GTATTTCGTC
GGCGACCGGC TGCGGGTGTG GGTCTCCGGC GGCGAGCGCC CGGCCTTCGT CATTCCGTCG
CGCTACATCA AGACCGAATT CGGCATCGAC TACGTCCAGC TCGGCGAGCC GGGCAAGACC
GTCGCGGTGC CGGTGCAGCG CGGCCGCGAT CATCCCACGC CGGACATGCC GGACGGCCTC
GAGATCCTCT CGGGCCTGCG TAATGGTGAC AGGTTGGTGC AGCCGTGA
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| Protein sequence | MTMRIRDMIT AGACAALLLG AAATPAAAAT LTVAEQKVSD EKAVFATVES ISVVPARSRI
GGTVIALKVR EGDSVARGQE IATIGDDKLT LQMNSLDAQM QALLAQASQA QIDFDRTSGL
VERGTLARTK LDEARTTLNV AENNLRAKTA ERAVVQQQFK EGQVLAPDDG RVLKKMVAVG
SVVLQGDTIV TVAQQHYKLR LRVPERHARF LKQGDRVRVD GAEFGDHTAK FGTIDLVYPL
IEDGRVVADA SVEGLGQYFV GDRLRVWVSG GERPAFVIPS RYIKTEFGID YVQLGEPGKT
VAVPVQRGRD HPTPDMPDGL EILSGLRNGD RLVQP
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