| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4222 |
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| Symbol | |
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| ID | 3912030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4797019 |
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| End bp | 4798125 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637886125 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487824 |
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| Protein GI | 86751328 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.163749 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGCGC ATCCGATGTT CGATGGATTG TTCCGGCTGT TCGCGGGCTT CATGCTCGCG
CTTGTGGCGC TCGCTCTGGC CGGATGTGAT GAGCAGAAGG CCACCCGGGA TCGTCCAGCG
CGGCCTGTTC TGGTCGACAC TGTCTACTAT GCCGCCGCTT CGCCGAAGCG CAGCTTTGTC
GGAACGATTC GGCCGCGGAT CGAAACCGAT ATCGGCTTTC GGGTCGCCGG CAAGGTCGCT
CAGCGCCTCG TCGAGGTCGG CCAGACGGTG GAGCCCGGCC AGACGCTGGC GTTGCTCGAC
CAGACCGATC TCAAATTGCA AGCCGAGCAG GCGGACGCCG AGCACAGCGC GGCCAAGGGC
GTGCTGGCGC AGGCGAGGGC CTCGGAAAAT CGCGCCAAGG AGCTCCGCGC CAAAGGCTGG
GCGACCGAGG CTCAGATGGA CCAGGCGCGC GCGGCCGCCG ACGAGGCGCG CGCCCGCTTT
GCCCGCGCCG AGCGCTCGGT CGACCTGACC CGCAACGCGC TGTCCTACGC CAGCCTGGTG
GCCGACACCC GTGGCGTCGT CACCGCGGCG CTGATCGACT CCGGACAGGT GGTCTCGGCG
GGGCAGGCGG CCTTCCGCAT CGCGCGGTTC GGCGAGAAGG AGGCGGTGGT GGCGATCCCG
GAGACGCTGA TCACCCGGGC GACCCAGGGC GTCGCCAGCG TTTCGCTGTG GTCGGAGCCG
GGTCGCAGCT ATGCGGCGAA GCTGCGGGAG GTCGCGCCGA TGGCCGATCC CGCGACCCGC
ACGTTTCTCG CCAAGTTCAC CCTGCCCGAT GCCGACGACC GCGTCGTGCT CGGGATGACC
GCGACGCTGA CGCTGGCCGA TCCGGACACG CTCCGCGTCG CCCGGGTGCC GCTGTCGGCG
CTGTTCAATC AGGGTGGCAC GCCGTCGGTC TATGTCGTGG ACTCCGCCGG ACAGGTGACG
CTGAAGCCGG TGACGGTGAA GGCCTATGAG ACCGAGAAGG TCGTGATCGG CGGCGGCGTC
GAGGACGGCG CCAAGGTGGT CGTGCTCGGG GTGCAGAAGC TCGATCCGGC CGAGAAGGTT
CGGGTCGTGT CGTCGCTGTC GTTCTAG
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| Protein sequence | MFAHPMFDGL FRLFAGFMLA LVALALAGCD EQKATRDRPA RPVLVDTVYY AAASPKRSFV
GTIRPRIETD IGFRVAGKVA QRLVEVGQTV EPGQTLALLD QTDLKLQAEQ ADAEHSAAKG
VLAQARASEN RAKELRAKGW ATEAQMDQAR AAADEARARF ARAERSVDLT RNALSYASLV
ADTRGVVTAA LIDSGQVVSA GQAAFRIARF GEKEAVVAIP ETLITRATQG VASVSLWSEP
GRSYAAKLRE VAPMADPATR TFLAKFTLPD ADDRVVLGMT ATLTLADPDT LRVARVPLSA
LFNQGGTPSV YVVDSAGQVT LKPVTVKAYE TEKVVIGGGV EDGAKVVVLG VQKLDPAEKV
RVVSSLSF
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