| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4052 |
|---|
| Symbol | |
|---|
| ID | 3911859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 4622503 |
|---|
| End bp | 4624341 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637885956 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_487656 |
|---|
| Protein GI | 86751160 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0831351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCC CACCGCTCCT CGACATCCGC GACCTCACCG TCGAATTCGC CACCCGCCGC
GGCATCGTCA AGGCGGTGCA GCATTTCGAT ATTTCGGTCG GCAAGGGCGA GACGCTGGCG
ATCGTCGGCG AATCCGGCTC GGGCAAATCG GTGACGTCGT TCGCGGTGAT GCGCATCCTT
GATCGCGCCG GCCGGATCGC CGAGGGCTCG GTGATGTTCG GCGGCATCGA TATCAAGGCC
GCGACCGAGC AGCAGATGCG CGACCTGCGC GGCCGCGAGA TCTCGATGAT CTTCCAGAAC
CCGCGTGCCG CGCTCAATCC GATCCGCAAG GTCGGCGACC AGATCGAGGA CGTGCTGCGC
CAGCACGTTC AATCCACCTC GTCCGACCGC GGCGAGAAGG CGATCGCGGC TCTCGAGGCG
GTGAAGATCG CGCGGCCGCG CGAGCGCTAT CACGCCTATC CGTTCCAACT CTCCGGCGGC
ATGTGCCAGC GCGTGGTGAT CGCGCTGGCG CTGGCCTGCA ATCCGCAATT GCTGATCGCC
GACGAGCCGA CCACCGGCCT CGACGTCACC ACCCAGAAGG CGGTGATGGA CCTGATCGTC
GAACTCACGC GTAGTCGTGG CCTGTCGACC ATCCTGATCA CCCACGACCT CGGCCTCGCC
GCCGCCTATT GCGACCGCGT CGTGGTGATG GAGAAGGGCC GCGTGGTCGA GACCGCGCTG
GCCGCCGACA TCTTCGCCAA CCCGCAGCAC CCCTACACGA AGAAGTTGAT GCGCGCGACG
CCGCGGCTGG GCGTGAGTTT GCGCGAGTTG CTCTCCGACG AAGAACGCGG GACGATGGCG
GTCGCGATGC CGGCGCAATC AACCAAGCCC GTCATGGCCG GGCTTGACCC GGCCATCCAT
CCCGCTTCGC AAGACGCTTC TTCGAAGGCG ATGGACCCCC GGGTCAAGCC CGGGGGTGAC
GACCAGGCAG GCGGGGAGCG CGAAGCGACT CTGCAGGCAC CGCGGCCCCT CCTCGTCGTC
GACAAGCTCG TCAAGGAATA TCCCCGCCAG GGCGCGACCG CCGTGCTCGG CAAACTGTTT
TCGCGCGGTC CCACGGTCGA GCCCGATGTC TTCCGCGCCG TCGACGGCAT CAGCTTTACG
GTCGGCCATG GCGAGAGCGT CGGGCTTGTC GGCGAATCCG GCTGCGGCAA GTCGACGACC
TCGATGATGG TGATGCGGCT GCTCGATCAG ACCTCGGGGC GGATCAGTTT CGACGGCGAG
GAGATCGGCG CTATTCTTCC GGGACGTTTC GCGCGGCTGC CGCAGCGCAA GGCGATCCAG
ATGGTGTTCC AGGACCCGAC CGACAGCCTC AACCCGCGCT TCACCGCCGC ACGCGCCATC
GCCGATCCAA TCATGCAGCT CGGCGACATC AAGGGCCGCG ACGCGCTGCG CGCACGCTGC
GAGGAATTGG CCGAACAGGT CGGCCTGCCG CTCGATCTGC TCGACCGCTT TCCGCATCAG
CTCTCCGGCG GCCAGAAAGC CCGGGTCGGC ATCGCCCGCG CCATCGCGCT GCAGCCGAAG
CTGATCATTC TCGACGAACC CACCGCCGCG CTCGACGTCT CCGTGCAGGC CGTGGTGCTG
AATTTGCTGC AGGACCTGAA ACAGTCGATG GGGATGAGCT ACCTGTTCGT GTCGCACGAT
CTCAACGTGG TGCGGCTCTT GTGCGACCGC GTGATCGTGA TGCGCGCCGG CCGGATCGTC
GAACAGGGAA CATCCGAGCA GGTGCTCGGC GCGCCGCAGG ACGCCTACAC CCGCGAACTG
TTGACGGCGA TCCCGCATCC GCCGCTGCCG GTGACGTGA
|
|---|
| Protein sequence | MTTPPLLDIR DLTVEFATRR GIVKAVQHFD ISVGKGETLA IVGESGSGKS VTSFAVMRIL
DRAGRIAEGS VMFGGIDIKA ATEQQMRDLR GREISMIFQN PRAALNPIRK VGDQIEDVLR
QHVQSTSSDR GEKAIAALEA VKIARPRERY HAYPFQLSGG MCQRVVIALA LACNPQLLIA
DEPTTGLDVT TQKAVMDLIV ELTRSRGLST ILITHDLGLA AAYCDRVVVM EKGRVVETAL
AADIFANPQH PYTKKLMRAT PRLGVSLREL LSDEERGTMA VAMPAQSTKP VMAGLDPAIH
PASQDASSKA MDPRVKPGGD DQAGGEREAT LQAPRPLLVV DKLVKEYPRQ GATAVLGKLF
SRGPTVEPDV FRAVDGISFT VGHGESVGLV GESGCGKSTT SMMVMRLLDQ TSGRISFDGE
EIGAILPGRF ARLPQRKAIQ MVFQDPTDSL NPRFTAARAI ADPIMQLGDI KGRDALRARC
EELAEQVGLP LDLLDRFPHQ LSGGQKARVG IARAIALQPK LIILDEPTAA LDVSVQAVVL
NLLQDLKQSM GMSYLFVSHD LNVVRLLCDR VIVMRAGRIV EQGTSEQVLG APQDAYTREL
LTAIPHPPLP VT
|
|---|
| |