| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4010 |
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| Symbol | |
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| ID | 3911817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4576142 |
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| End bp | 4577191 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637885914 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_487614 |
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| Protein GI | 86751118 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.450209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.005496 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGTAC ATTCCGATAT GCTGGCCTGC CGCGAGATGA TCAAGGAAGG CTCTCGCACC
TTCCACGCCG CCTCGATGGT GCTGCCGCGC CGGATCAGCG ATCCGGCGAT CGCGCTGTAC
GCGTTCTGCC GCGTCGCCGA CGATGCCGTC GATCTCGGCC TCGATCGCAC CGCTGCGGTC
GAAGTGCTGA AGGACCGGCT CGATCGCGCC TGCCGCGGCC TGCCGCGGCC GTATCCGTCG
GACCGCGCTT TCGCCGACGT GATCGCGCGG TTCTCGATTC CGCCGGCGAT TCCCGAGGCG
CTGATCGAAG GCCTCGAATG GGACTCGCAG GGCCGCCGCT TCGAGACGCT GTCGGATCTC
TACGGCTATG CGGCGCGCGT CGCCGGCACC GTGGGGGTGA TGATGACCCT GGTGATGGGG
CAGCGCCGGC CGGACATCGT CGCGCGCGCC TGCGATCTCG GCTGCGCGAT GCAGCTCACC
AACATCGCCC GCGATATCGG CGAGGACGCC CGCAACGGCC GCATCTACAT GCCGCTGTCG
TGGATGCGCG AGGCCGGGCT CGATCCCGAG ACCTGGCTCA AGGACCCGAA ATTCACGCCG
GAGATCGCCG GCATCGTCAA GCGGCTGATC GACACCGCGG ATGCGCTGTA CGATCGCGCC
ACGCTCGGCA TCGCCAATCT GCCGCGCTCC TGCCGCCCCG GCATCTTCGC GGCGCGCGCG
CTCTACGCCG AGATCGGCCG CGAGGTCGAA CGCTCCGGGC TCGATTCGGT GTCGTCGCGC
GCCGTGGTCT CGACCGGGCG CAAGCTCGCG GTGCTGGCGC GGATGCTGGC GTTCCAGGAA
ACCGAATGGG CGCCGGCGAA ATATCTGCCG ACCCGGTTCG GCGACATGGA AGAGACTCGC
TTCCTGATCG ACGCCGTGAT CGCCCATCCG GTCCGCGACG TGCCGCCGGC CCCGCGCGTC
AAGCCGATCG AGCAGAAAGT CGCCTGGCTG GTCGACCTGT TCACGAGGCT GGAACGCCGT
GACCAGATGC TGCAGCGCAG CCGGGTGTAG
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| Protein sequence | MTVHSDMLAC REMIKEGSRT FHAASMVLPR RISDPAIALY AFCRVADDAV DLGLDRTAAV
EVLKDRLDRA CRGLPRPYPS DRAFADVIAR FSIPPAIPEA LIEGLEWDSQ GRRFETLSDL
YGYAARVAGT VGVMMTLVMG QRRPDIVARA CDLGCAMQLT NIARDIGEDA RNGRIYMPLS
WMREAGLDPE TWLKDPKFTP EIAGIVKRLI DTADALYDRA TLGIANLPRS CRPGIFAARA
LYAEIGREVE RSGLDSVSSR AVVSTGRKLA VLARMLAFQE TEWAPAKYLP TRFGDMEETR
FLIDAVIAHP VRDVPPAPRV KPIEQKVAWL VDLFTRLERR DQMLQRSRV
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