| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3890 |
|---|
| Symbol | |
|---|
| ID | 3911694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4443588 |
|---|
| End bp | 4444355 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637885791 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_487494 |
|---|
| Protein GI | 86750998 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.563961 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGA CAGCAACCGG CGACTTGCTG CTCGAAGCCG ACAATATCGA GATCGGTTAC
GGCCGCGTCA ATGTCGTGCA CGGCGCCAGC CTCAGCGTGC GGCGCGGCCA GATCATCGCC
ATCATCGGCC CCAACGGCGC CGGCAAGACC ACGCTGCTCA GCGGCCTGAT GGGGCTGCTG
CCGGTGAAGG GCGCGCTGTC GTTCTTCGGC GAGACGATGG CCGAGCAGCC GAGCGTCGAG
GCGCTGGTCG GGCGCGGCGT CACGCTGATC CCGGAGACCC GCGAATTGTT CGGGCCGATG
AGCGTCGAGG ACAATCTGCG GCTCGGCGGC TTCGCGCGCT GGCAGCAGGG CCATCGCGAT
CTCGACGCCG GCCTCGCCGA AGTCTACGCG CTGATGCCGC GGCTGCAGGA GCGCAAGCGC
CAGGCGGCGA AGACGCTGTC CGGCGGCGAG CGCCAGATGC TGGCGATGGG CCGCGCGCTG
ATGTCGAAGC CGCAACTGCT GCTGCTCGAC GAGCCGAGCC TCGGGCTGGC GCCGCTGATC
ACCCGCGACA TCCTGCGCAC GGTGGCGAGC CTGCGCGACC GCGGCATGTC GTGCCTGCTG
GTCGAGCAGA ACGCCAAGGC AGCGCTGCGC ATCGCCGACT ACGCCTATGT GATGGAATCC
GGCGCCTTCG TGCTGCAAGG CCCGGCCGCC GAGATCGCCG CCAATCCGGA CGTCATCGCC
AGCTATCTCG GCGTGCGCTC CGCCGCGGCG GCGGAGAGCC ACGCCTGA
|
|---|
| Protein sequence | MTATATGDLL LEADNIEIGY GRVNVVHGAS LSVRRGQIIA IIGPNGAGKT TLLSGLMGLL
PVKGALSFFG ETMAEQPSVE ALVGRGVTLI PETRELFGPM SVEDNLRLGG FARWQQGHRD
LDAGLAEVYA LMPRLQERKR QAAKTLSGGE RQMLAMGRAL MSKPQLLLLD EPSLGLAPLI
TRDILRTVAS LRDRGMSCLL VEQNAKAALR IADYAYVMES GAFVLQGPAA EIAANPDVIA
SYLGVRSAAA AESHA
|
|---|
| |