| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3600 |
|---|
| Symbol | |
|---|
| ID | 3911402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 4130524 |
|---|
| End bp | 4132101 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637885502 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_487206 |
|---|
| Protein GI | 86750710 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.887287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.975846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGC AGACCGAGCC GGCCAATTTG GCCGACGTGA TCCGTGCGCA GGCCAAGACG
CGCGGCGACG AAATTCTCTA CGAATTCGAA GGCCGCATCA CCAGCTTCGC GCAGTTCGAT
GCCCACACCA ACCGGATCGC CCGCGCGCTC GCGGCCTCCG GCGTCAAACC GAACGAGCGC
ATCGCCTATC TCGGCAAGAA CAGCGACATC TATTTCGAGC TGTGGGCCGG CGCGATGAAG
GCCAATGTGG TGATCGCGCC GGTGAACTGG CGGCTCGCCG GGCCGGAGAT CGCCTATATC
GTCGAGGACT GCAAGGCGGC GATCCTCTTC GTCGGCCCTG AATTCGTCGA TCAGGTCCGC
GGCCTGACGG ATCAGATCCC CAGCGTTCGC GCCATCATCA CCACCGAAGG CGGCGCGCCG
GAGTGGCAGG ATTTTGCCCA ATGGCGCGAC GCGCAGCCGA GCGACGATCC GCAGGTCGCG
GTGGCGCCGA GCGACATCGC GATCCAGCTC TACACCTCCG GCACCACCGG CAAGCCGAAG
GGCGCGATGC TCAGCCACGC CAATTTCCTG TCGCTGGTCC GCGCCGGCCG CGACAACACG
CCGGAGTGGA ACATCTGGTC GAGCGACGAC GTCTCGCTGA TCGCCATGCC GGTGTTTCAC
ATCGGCGGCT CCGGCTGGGG CATGATGAGC ATCTATCACG GCGCCAAGGG CGTGATCGCG
CGCGAATTCG ATCCGACCAA GGTGCTCGAC TTCTTCGAGC AGGCCAAGAT CACCAAGCTG
TTCATGGTGC CCGCCGCGAT GCAATTCGTG GTGCGGCAGC CGCGCGCCCG CGAGGTGGAT
TTCTCGCGGC TGAAATACAT GCTGTACGGC GCCTCGCCGA TTCCGGCGGC GCTGCTGAAG
GAATGCATCG ACGTTTTCAA ATGCGGCTTC GTGCAGATGT ACGGCATGAC CGAGACCACC
GGCACGATCG TCGCGCTGCC GCCCGAGGAC CACGTCGAAG GGCTGGAGCG GATGCGCTCG
GCCGGCAAGG CGCTGCCCGG CGTCGAGATC GCGATTCTCG ATCCCGACGG CAAGCCGCTG
CCGCCGCGCC AGGTCGGCGA GATCGCCACC CGCTCCGGCT CCAACATGGC CGGCTACTGG
AATCTGCCGG AGGCGACCAA GAAGACCATC GACGGCGACA ACTGGCTGCG CACCGGCGAC
GCCGGCTACA TGGACGAGGA CGGCTACGTC TATATCCACG ACCGCATCAA GGACATGATC
ATCTCCGGCG GCGAGAACAT CTATCCGGCC GAAGTCGAGA GCGCGATCTG CGATCATCCG
GACGTCGCCG AAGTCGCCGT CGTCGGCGTG CCGGACGATC AATGGGGCGA AGCGGTGAAA
GCCGTGGTGG TGATGAAGCC CGGCAAGGAA GCCACCGCGC AGGACATCAT CGGCTTCACC
CGCACCCGCA TCGCCGGCTT CAAGACGCCG AAGTCGATCG ACTTCATCCC GGCCCTGCCC
CGCAACGCCT CCGGCAAAAT CCTGCGCCGG CATCTGCGCG ATCCGTATTG GACCGGGAAA
GACCGCCAGG TGAACTAG
|
|---|
| Protein sequence | MSEQTEPANL ADVIRAQAKT RGDEILYEFE GRITSFAQFD AHTNRIARAL AASGVKPNER
IAYLGKNSDI YFELWAGAMK ANVVIAPVNW RLAGPEIAYI VEDCKAAILF VGPEFVDQVR
GLTDQIPSVR AIITTEGGAP EWQDFAQWRD AQPSDDPQVA VAPSDIAIQL YTSGTTGKPK
GAMLSHANFL SLVRAGRDNT PEWNIWSSDD VSLIAMPVFH IGGSGWGMMS IYHGAKGVIA
REFDPTKVLD FFEQAKITKL FMVPAAMQFV VRQPRAREVD FSRLKYMLYG ASPIPAALLK
ECIDVFKCGF VQMYGMTETT GTIVALPPED HVEGLERMRS AGKALPGVEI AILDPDGKPL
PPRQVGEIAT RSGSNMAGYW NLPEATKKTI DGDNWLRTGD AGYMDEDGYV YIHDRIKDMI
ISGGENIYPA EVESAICDHP DVAEVAVVGV PDDQWGEAVK AVVVMKPGKE ATAQDIIGFT
RTRIAGFKTP KSIDFIPALP RNASGKILRR HLRDPYWTGK DRQVN
|
|---|
| |