Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3506 |
Symbol | |
ID | 3911308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 4013583 |
End bp | 4015892 |
Gene Length | 2310 bp |
Protein Length | 769 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637885408 |
Product | penicillin-binding protein 1A |
Protein accession | YP_487112 |
Protein GI | 86750616 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.430284 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGCGC CCTGCCCGGC GCCGTCACGC GATTGGTCGA AGCCGGTGCC GAAGATTCTG CCAGACAATT GGATGCAGCG GATCCGGAAC TGGTTTCTGG ACCTCGACGC GCGGCTGGAT TCGACGCTGT TCTCGTCGGC CGCCGGCATC CGCGAATTGT GGGAGCGCTT CTCCACTTTC ATGGACCGCT TCTATGTCGG TCACTGGAAG CGCTGGGTGT TCATCGAGCC GCTGTCGGAA GCCGCCACGA TGGGCGCCGG CGGCCTGCTG GTGCTGCTGG CGCTGGCGCA GCCGGCGTTC CGCGAGACCG GCGACGAGGA CTGGCTGAAG AAATCCGACC TCGCCGTCTC CTTCCTGGAT CGCTACGGCA ATCCGATCGG CAATCGCGGC ATCAAGCACA ACGACTCGAT CCCGCTGGAA GACTTCCCCG ACAATCTGAT CAAGGCGACG CTCGCCACCG AGGACCGCCG CTTCTACGAT CATTTCGGCA TCGACGTCGC CGGCACCGCG CGCGCGCTGG TGACCAATGC GCAGGCCGGC GGCGTGCGCC AGGGCGGCTC CTCGATCACC CAGCAGCTCG CCAAGAACCT GTTCCTGTCG AACGAGCGCA CGCTGGAACG CAAGGTCAAC GAGGCGTTTC TGGCGATCTG GCTGGAGACC CGGCTGACCA AGAACGAGAT CCTCAAGTTG TATCTCGATC GCGCCTATAT GGGCGGCGGC ACCTTCGGCG CCGACGGCGC GGCGCATTTC TACTTCAACA AATCGGTGCG CGACGTGAAC CTCGCCGAGG CCGCGATGCT GGCCGGGCTG TTCAAGGCGC CGACCAAATT CGCCCCGCAC ATCAACCTGC CCGCCGCGCG CGCCCGCGCC AACGTCGTGC TCGACAATCT GGTCGACGCC GGCTTCATGA CCGAGGGCCA GGTGTTCGGC GCGCGGCGCA ATCCGGCCTC GGTGGTCGAC CGCCGCGACG AGAATTCGCC GAACTATTAT CTCGACTGGG CGTTCGAGGA AGTCCGCAAG ATCGTCGAGA CGTTTCCGAA ATCCTACACC GAGCGCGTCT TCGTGGTGCG CACCACGATC GACATGAACG TGCAGCGCGC CGCCGAGGCC GCGGTCGAGA ACCAGCTCCG CCAGTTCGGC CGCGACTATC ATGCGACGCA GGCCGCCGCG GTGCTGTCGG ATCTCGACGG CGGCGTCCGC GCCATGGTCG GCGGCCGCGA CTACGGCTCC AGCCAGTTCA ACCGCGCGGT CGACGCCTAT CGCCAGCCCG GCTCGTCGTT CAAGCCGTAT GTCTATACGA CCGCGCTGCT CAACGGCTTC AAGCCGACCT CGATCGTGGT CGACGGCCCG GTCTGCATCG GCAATTGGTG CCCGCAGAAT TACGGCCACT CTTATTCGGG TTCGGTGACG CTGACCCAGG CGATCACCCG CTCGATCAAC GTCGTGCCGG TGAAGCTGTC GATCACGCTC GGCGGCAAGG CCGGGCCGAA GGCCGGCCGC GCCAAGATCG TCGAAGTCGC GCGCCGCTTC GGCATCAAGG CGCCGCTGAT CGACACCCCG TCGCTGCCGA TCGGCTCGAC CGAAGTCACC GTGCTCGAAC ACGCGGTGGC CTACGCCACC TTCCCGAACA AGGGCAAGGC GCCGACGCCG CACGCGGTGC TCGAAGTGCG CACCGGCGCC GGCGATCTGG TGTGGCGGTT CGACCGCGAC GGCCCGAAGC AGAAGCAGGC GATCCCGGCC TCGGTCGCCG CCGACATGGC CGGCATGATG AGCCACGTCG TCTCCGAGGG CACCGCGCGC CGCGCAGCCC TCGACGGCAT TCCGACCGCG GGCAAGACCG GCACCACCAA CGCCTATCGC GACGCCTGGT TCGTCGGCTA CACCGGCAAT TTCAGTTGCG CGGTGTGGTA CGGCAACGAC GACTACTCGC CGACCAACCG CATGACCGGC GGCTCGCTGC CGGCGCAGAC CTGGCGCGAC ATCATGATCG CGGCGCATCA GGGCGTCGAG ATCAAGGAGC TCGCCGGCGT CGGCATGGGC ACCAGGCTGC CGGCCTCGCA GGCGCAAGCC AATGCGCGCG CCGCCGACGA CGACGGCAAA CCGGCGCCGC CACCGGTGCT GACGCGGCGC GGCGCGGATA TTCTGGTGCG CGTCGAAAAG ATGCTGGACG ACGCCGCCAA GGCCATGGAC AAGGCGATGG ACAAGACCCC GCCCGCCAAG CCGGTGTCGT CGACCGGCGT CGGATTCCCG GACAGTTTCG CCGCGGCGAC GCCGAACGGG CCGCCGGCGA CGGCGCCGCG CAAGAACTGA
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Protein sequence | MEAPCPAPSR DWSKPVPKIL PDNWMQRIRN WFLDLDARLD STLFSSAAGI RELWERFSTF MDRFYVGHWK RWVFIEPLSE AATMGAGGLL VLLALAQPAF RETGDEDWLK KSDLAVSFLD RYGNPIGNRG IKHNDSIPLE DFPDNLIKAT LATEDRRFYD HFGIDVAGTA RALVTNAQAG GVRQGGSSIT QQLAKNLFLS NERTLERKVN EAFLAIWLET RLTKNEILKL YLDRAYMGGG TFGADGAAHF YFNKSVRDVN LAEAAMLAGL FKAPTKFAPH INLPAARARA NVVLDNLVDA GFMTEGQVFG ARRNPASVVD RRDENSPNYY LDWAFEEVRK IVETFPKSYT ERVFVVRTTI DMNVQRAAEA AVENQLRQFG RDYHATQAAA VLSDLDGGVR AMVGGRDYGS SQFNRAVDAY RQPGSSFKPY VYTTALLNGF KPTSIVVDGP VCIGNWCPQN YGHSYSGSVT LTQAITRSIN VVPVKLSITL GGKAGPKAGR AKIVEVARRF GIKAPLIDTP SLPIGSTEVT VLEHAVAYAT FPNKGKAPTP HAVLEVRTGA GDLVWRFDRD GPKQKQAIPA SVAADMAGMM SHVVSEGTAR RAALDGIPTA GKTGTTNAYR DAWFVGYTGN FSCAVWYGND DYSPTNRMTG GSLPAQTWRD IMIAAHQGVE IKELAGVGMG TRLPASQAQA NARAADDDGK PAPPPVLTRR GADILVRVEK MLDDAAKAMD KAMDKTPPAK PVSSTGVGFP DSFAAATPNG PPATAPRKN
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