Gene RPB_3506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3506 
Symbol 
ID3911308 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4013583 
End bp4015892 
Gene Length2310 bp 
Protein Length769 aa 
Translation table11 
GC content68% 
IMG OID637885408 
Productpenicillin-binding protein 1A 
Protein accessionYP_487112 
Protein GI86750616 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.430284 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGCGC CCTGCCCGGC GCCGTCACGC GATTGGTCGA AGCCGGTGCC GAAGATTCTG 
CCAGACAATT GGATGCAGCG GATCCGGAAC TGGTTTCTGG ACCTCGACGC GCGGCTGGAT
TCGACGCTGT TCTCGTCGGC CGCCGGCATC CGCGAATTGT GGGAGCGCTT CTCCACTTTC
ATGGACCGCT TCTATGTCGG TCACTGGAAG CGCTGGGTGT TCATCGAGCC GCTGTCGGAA
GCCGCCACGA TGGGCGCCGG CGGCCTGCTG GTGCTGCTGG CGCTGGCGCA GCCGGCGTTC
CGCGAGACCG GCGACGAGGA CTGGCTGAAG AAATCCGACC TCGCCGTCTC CTTCCTGGAT
CGCTACGGCA ATCCGATCGG CAATCGCGGC ATCAAGCACA ACGACTCGAT CCCGCTGGAA
GACTTCCCCG ACAATCTGAT CAAGGCGACG CTCGCCACCG AGGACCGCCG CTTCTACGAT
CATTTCGGCA TCGACGTCGC CGGCACCGCG CGCGCGCTGG TGACCAATGC GCAGGCCGGC
GGCGTGCGCC AGGGCGGCTC CTCGATCACC CAGCAGCTCG CCAAGAACCT GTTCCTGTCG
AACGAGCGCA CGCTGGAACG CAAGGTCAAC GAGGCGTTTC TGGCGATCTG GCTGGAGACC
CGGCTGACCA AGAACGAGAT CCTCAAGTTG TATCTCGATC GCGCCTATAT GGGCGGCGGC
ACCTTCGGCG CCGACGGCGC GGCGCATTTC TACTTCAACA AATCGGTGCG CGACGTGAAC
CTCGCCGAGG CCGCGATGCT GGCCGGGCTG TTCAAGGCGC CGACCAAATT CGCCCCGCAC
ATCAACCTGC CCGCCGCGCG CGCCCGCGCC AACGTCGTGC TCGACAATCT GGTCGACGCC
GGCTTCATGA CCGAGGGCCA GGTGTTCGGC GCGCGGCGCA ATCCGGCCTC GGTGGTCGAC
CGCCGCGACG AGAATTCGCC GAACTATTAT CTCGACTGGG CGTTCGAGGA AGTCCGCAAG
ATCGTCGAGA CGTTTCCGAA ATCCTACACC GAGCGCGTCT TCGTGGTGCG CACCACGATC
GACATGAACG TGCAGCGCGC CGCCGAGGCC GCGGTCGAGA ACCAGCTCCG CCAGTTCGGC
CGCGACTATC ATGCGACGCA GGCCGCCGCG GTGCTGTCGG ATCTCGACGG CGGCGTCCGC
GCCATGGTCG GCGGCCGCGA CTACGGCTCC AGCCAGTTCA ACCGCGCGGT CGACGCCTAT
CGCCAGCCCG GCTCGTCGTT CAAGCCGTAT GTCTATACGA CCGCGCTGCT CAACGGCTTC
AAGCCGACCT CGATCGTGGT CGACGGCCCG GTCTGCATCG GCAATTGGTG CCCGCAGAAT
TACGGCCACT CTTATTCGGG TTCGGTGACG CTGACCCAGG CGATCACCCG CTCGATCAAC
GTCGTGCCGG TGAAGCTGTC GATCACGCTC GGCGGCAAGG CCGGGCCGAA GGCCGGCCGC
GCCAAGATCG TCGAAGTCGC GCGCCGCTTC GGCATCAAGG CGCCGCTGAT CGACACCCCG
TCGCTGCCGA TCGGCTCGAC CGAAGTCACC GTGCTCGAAC ACGCGGTGGC CTACGCCACC
TTCCCGAACA AGGGCAAGGC GCCGACGCCG CACGCGGTGC TCGAAGTGCG CACCGGCGCC
GGCGATCTGG TGTGGCGGTT CGACCGCGAC GGCCCGAAGC AGAAGCAGGC GATCCCGGCC
TCGGTCGCCG CCGACATGGC CGGCATGATG AGCCACGTCG TCTCCGAGGG CACCGCGCGC
CGCGCAGCCC TCGACGGCAT TCCGACCGCG GGCAAGACCG GCACCACCAA CGCCTATCGC
GACGCCTGGT TCGTCGGCTA CACCGGCAAT TTCAGTTGCG CGGTGTGGTA CGGCAACGAC
GACTACTCGC CGACCAACCG CATGACCGGC GGCTCGCTGC CGGCGCAGAC CTGGCGCGAC
ATCATGATCG CGGCGCATCA GGGCGTCGAG ATCAAGGAGC TCGCCGGCGT CGGCATGGGC
ACCAGGCTGC CGGCCTCGCA GGCGCAAGCC AATGCGCGCG CCGCCGACGA CGACGGCAAA
CCGGCGCCGC CACCGGTGCT GACGCGGCGC GGCGCGGATA TTCTGGTGCG CGTCGAAAAG
ATGCTGGACG ACGCCGCCAA GGCCATGGAC AAGGCGATGG ACAAGACCCC GCCCGCCAAG
CCGGTGTCGT CGACCGGCGT CGGATTCCCG GACAGTTTCG CCGCGGCGAC GCCGAACGGG
CCGCCGGCGA CGGCGCCGCG CAAGAACTGA
 
Protein sequence
MEAPCPAPSR DWSKPVPKIL PDNWMQRIRN WFLDLDARLD STLFSSAAGI RELWERFSTF 
MDRFYVGHWK RWVFIEPLSE AATMGAGGLL VLLALAQPAF RETGDEDWLK KSDLAVSFLD
RYGNPIGNRG IKHNDSIPLE DFPDNLIKAT LATEDRRFYD HFGIDVAGTA RALVTNAQAG
GVRQGGSSIT QQLAKNLFLS NERTLERKVN EAFLAIWLET RLTKNEILKL YLDRAYMGGG
TFGADGAAHF YFNKSVRDVN LAEAAMLAGL FKAPTKFAPH INLPAARARA NVVLDNLVDA
GFMTEGQVFG ARRNPASVVD RRDENSPNYY LDWAFEEVRK IVETFPKSYT ERVFVVRTTI
DMNVQRAAEA AVENQLRQFG RDYHATQAAA VLSDLDGGVR AMVGGRDYGS SQFNRAVDAY
RQPGSSFKPY VYTTALLNGF KPTSIVVDGP VCIGNWCPQN YGHSYSGSVT LTQAITRSIN
VVPVKLSITL GGKAGPKAGR AKIVEVARRF GIKAPLIDTP SLPIGSTEVT VLEHAVAYAT
FPNKGKAPTP HAVLEVRTGA GDLVWRFDRD GPKQKQAIPA SVAADMAGMM SHVVSEGTAR
RAALDGIPTA GKTGTTNAYR DAWFVGYTGN FSCAVWYGND DYSPTNRMTG GSLPAQTWRD
IMIAAHQGVE IKELAGVGMG TRLPASQAQA NARAADDDGK PAPPPVLTRR GADILVRVEK
MLDDAAKAMD KAMDKTPPAK PVSSTGVGFP DSFAAATPNG PPATAPRKN