| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3438 |
|---|
| Symbol | |
|---|
| ID | 3911240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3941868 |
|---|
| End bp | 3942926 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637885341 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_487045 |
|---|
| Protein GI | 86750549 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0480484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCCC TTCCCCGACT GTTCTACGTG ACTTCCAGCC TGGACGAGGC GACCGCCCTG
GCGACCTGGA GTGCGGTGAT CTCGCCGCTG TTCGAACCGC GCCCCTGCGG CCCGAGCAAG
AAGACACCGA CCGGCTCGGC CTATGGCATC ATCATTGGCG ACCTGATCAT CGCCAAGGTC
GCCTTCAACG CGCAGGACTT CGTCCGCGAC GAGCCACGCA TCGCGGCGAC GCCGGATCAC
CTGCTGCTGC ATCTCTACGT AACCGGCGGG TTCAACGGTG TGGTCACCCG GCAGCAGACG
GCGATCGGCC CCGGCAAGGT CGCGCTGATC GATCTGGCCC ATCCGATCGC CACGCGCGCT
TTCGCCTCCA GCACGGTGTG CCTGATCGTT CCGCGCAAGC TGCTCGGCGG CCTGCCGCTC
GACACGCTGA AGCCGAGGCT CGATCCGCTC CGGAACGATC TGCTCGCGGC GCATCTGCGA
TCGCTTCAGG AACGCAGCGC GCAATTGACC GAGACGGACG TGGCCGACAC GGTGGCCGAC
ACCGTGGGTT TTCTGAGACG GCTGCTCGCC CCCGCCCAGG ATGAATCGCC AGCCGCCGAG
CAGCGAACCG ACGAGACCAT CCTGGCGCTT CTGGAAGCGC TGATCCGCGA CAATCTCGCT
TCGCCCGATC TGTCGCCGGA TTGGCTGGCA CAGCGACTGG ATGTCTCGCG CGCGTCGCTG
TATCGGCTGT TTGCCGACCG CGGCGGCATC ATGCGCTACG TCCAGGAACG GCGGCTGCTC
GCGGTCCAGG CGGCGCTGAG CGATCCGATC GAAACGCGCC GCTTGTCCCG CCTGGCGTCC
GATCTCGGCT TCAAGAGCGA GGCGCATTTC AGCCGGAGCT TTCGCGCCCG CTTCGGCGTC
ACCGCCAGCG CCTTTCGCAA GGCGCAACTC GACGCCTCCG CGGCGATCCA GCTCACCAGC
CCGGCGGTGG TGCAACAATG GTGGACGGCG GTCGCTCGGA GCCCGCCGGC CCGCGGCCTG
GCCCCGGCCG ACGAGCGGGG CGCGGTCCTT CCGCTGTAG
|
|---|
| Protein sequence | MASLPRLFYV TSSLDEATAL ATWSAVISPL FEPRPCGPSK KTPTGSAYGI IIGDLIIAKV
AFNAQDFVRD EPRIAATPDH LLLHLYVTGG FNGVVTRQQT AIGPGKVALI DLAHPIATRA
FASSTVCLIV PRKLLGGLPL DTLKPRLDPL RNDLLAAHLR SLQERSAQLT ETDVADTVAD
TVGFLRRLLA PAQDESPAAE QRTDETILAL LEALIRDNLA SPDLSPDWLA QRLDVSRASL
YRLFADRGGI MRYVQERRLL AVQAALSDPI ETRRLSRLAS DLGFKSEAHF SRSFRARFGV
TASAFRKAQL DASAAIQLTS PAVVQQWWTA VARSPPARGL APADERGAVL PL
|
|---|
| |