| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3427 |
|---|
| Symbol | |
|---|
| ID | 3911229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3924796 |
|---|
| End bp | 3926073 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637885330 |
|---|
| Product | formyl-coenzyme A transferase |
|---|
| Protein accession | YP_487034 |
|---|
| Protein GI | 86750538 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | [TIGR03253] formyl-CoA transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.113815 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGG CGCTCGACGG CGTTCGCATT CTCGATTTCA CCCACGTCCA GTCCGGCCCG
ACCTGCACCC AGTTGCTGGC GTGGTTCGGC GCCGACGTCA TCAAGGTCGA GCGTCCCGGC
ACCGGCGACA TCACCCGCGG GCAGTTGCAG GACATCCCGA AGGTGGACAG CCTGTATTTC
ACCATGCTGA ACCACAACAA GCGCTCGATC ACGCTCGACA CCAAGAACCC CAAGGGCAAG
GAGGTGCTGA CCGCGCTGAT CCGCTCCTGC GACGTGCTGG TGGAGAATTT CGGCCCCGGC
GTGCTCGATC GCATGGGCTT CACCTGGGAC AAGATCCAGG AGATCAACCC GCGGATGATC
GTCGCCTCGA TCAAGGGTTT CGGCCCGGGT CCCTATGAAG ACTGCAAGGT CTACGAGAAC
GTCGCGCAAT GCACCGGCGG CGCCGCCTCG ACCACCGGCT TCCGCGACGG CCCGCCGCTG
GTCACCGGCG CACAGATCGG CGACTCGGGC ACCGGGCTGC ATCTCGCGCT CGGCATCGTC
ACCGCGCTGT ATCAGCGCCA TCACACCGGC CGCGGCCAGC GCGTCACCGC CGCGATGCAG
GACGGCGTGC TCAATTTGTC GCGCGTCAAG CTGCGCGATC AGCAGCGCCT CGCCCACGGC
CCGCTCAAGG AATACAGCCA GTTCGGCGAA GGCATTCCGT TCGGCGACGC GGTGCCGCGC
GCCGGCAATG ATTCCGGCGG CGGCCAGCCC GGCCGCATCC TGAAATGCAA GGGCTGGGAG
ACCGATCCCA ACGCCTACAT CTACTTCATC GCGCAGGCCC CGGTGTGGGA GAAGATCTGC
GACGTGATCG GCGAGACCGG CTGGAAGACC CATCCGGACT ACGCGACGCC GCCGGCGCGG
CTGAAGCACC TCAACGACAT CTTCGCCCGC ATCGAACAAT GGACCATGAC CAAGACCAAG
TTCGAGGCGA TGGACATCCT CAACAGGGAC GACATTCCCT GCGGGCCGAT CCTGTCGATG
AAGGAACTCG CCGAGGACGC CTCGCTGCGC GCCACCGGCA CGATCGTCGA GGTCGATCAT
CCGACCCGCG GCAAATATCT GTCGGTCGGC AACCCGATCA AACTGTCGGA CTCGCCGACC
CATGTCGAGC GCTCGCCGCT TCTCGGCGAG CACACCGACG AAATTCTGCG CGACGTCCTC
GGCTTCAACG ATCATCAGGT CGCTGAAATC CACGATTCCG GCGCACTCGC TCCGCCGCGC
AAGCAGGCCG CAGAGTAA
|
|---|
| Protein sequence | MTKALDGVRI LDFTHVQSGP TCTQLLAWFG ADVIKVERPG TGDITRGQLQ DIPKVDSLYF
TMLNHNKRSI TLDTKNPKGK EVLTALIRSC DVLVENFGPG VLDRMGFTWD KIQEINPRMI
VASIKGFGPG PYEDCKVYEN VAQCTGGAAS TTGFRDGPPL VTGAQIGDSG TGLHLALGIV
TALYQRHHTG RGQRVTAAMQ DGVLNLSRVK LRDQQRLAHG PLKEYSQFGE GIPFGDAVPR
AGNDSGGGQP GRILKCKGWE TDPNAYIYFI AQAPVWEKIC DVIGETGWKT HPDYATPPAR
LKHLNDIFAR IEQWTMTKTK FEAMDILNRD DIPCGPILSM KELAEDASLR ATGTIVEVDH
PTRGKYLSVG NPIKLSDSPT HVERSPLLGE HTDEILRDVL GFNDHQVAEI HDSGALAPPR
KQAAE
|
|---|
| |