| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3411 |
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| Symbol | |
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| ID | 3911213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3898432 |
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| End bp | 3899523 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637885314 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487018 |
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| Protein GI | 86750522 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.591463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.695679 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAC CCACCATGTT ACCGCCGCTT CGGATCATCC TGTTGCTGCT TATGGCCACG
CCGCTGGCGG CGTGCGGCGA GAAGGCTCAG CAAGCCCGGC CGATCAATCT GGTGAAGACC
GAGATCGTGC ACCTCGAGCC CCGGCAGACG ATTGTTCGTC TCACCGGCGA CGTCCAGGCG
CGCGTGACCA GCGAACTGTC CTTCCGCGTC AGTGGCCGGG TCACCGAGCG GCTGGTCGAT
GTCGGCGCCC ATGTGAATGC CGGCGACGTG CTGGCGCGCA TCGATCCGAC CGAGCAACAG
GCCGACCTGG TCGGCTCGCA GGCCGCCGTC GCCTCGGCGG AGGCGCAACT GCGCCTCGCC
AATGCGACCT TCGACCGGCA GAAATCGCTG ATGGCCAGCG GCTTCACCAC CCGCAGCTCC
TACGACCAGG CGCAGGAGGG ATTGCGGACC GCCGAAGGCT CCCTCGACAA CGCCAAGGCC
CAGCTCGAAA TCGCAAGGGA TGCGCTGACC TATACCGAAC TGCGCGCGAG CGCGTCGGGC
ATCATCACGG CGCGCAACAT CGAGGTCGGG CAGGTCGCCC AATCCGCCCA GTCGGCCTAC
ACGCTGGCGG AGGATGGCGC CCGCGACGCC GTGTTCGACG TCTACGAATC GGTGTTTCTG
ACGCCGCTCC AGGGCGGCAC CATCAAACTC ACGCTGGTGT CGGATCCGTC GGTCACCGCC
ATCGGGCGTC CGCGGGAGAT TTCTCCCACC GTCGACCAGA AGAGCGGCAC CGTTCGGGTC
AAGCTGTCGA TCGAGAATCC GCCGGCCGCG ATGACGCTCG GCAGCGCCGT CACGGGCGAG
GGGCGCAGCC GTTCCGTGGA CAAGATCGTG CTGCCCTGGA GTGCATTGAC CTCCGACCAG
AAAGGGCCGG CCGTCTGGGT GATCGACCCC AAGACCCGCG CCGTGTCGCT CAGGAGCGTC
ACCGTGGAAA GCTACGAAAC CAGCTCGATC ATCGTGGCCG ACGGCCTGAA GGCCGGCGAG
CGCGTCGTCG TCGACGGCGG CAAGATGCTC CGCCCCGCGG AGATCGTCAC TTATGACGGG
GAAAACGCAT GA
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| Protein sequence | MSQPTMLPPL RIILLLLMAT PLAACGEKAQ QARPINLVKT EIVHLEPRQT IVRLTGDVQA
RVTSELSFRV SGRVTERLVD VGAHVNAGDV LARIDPTEQQ ADLVGSQAAV ASAEAQLRLA
NATFDRQKSL MASGFTTRSS YDQAQEGLRT AEGSLDNAKA QLEIARDALT YTELRASASG
IITARNIEVG QVAQSAQSAY TLAEDGARDA VFDVYESVFL TPLQGGTIKL TLVSDPSVTA
IGRPREISPT VDQKSGTVRV KLSIENPPAA MTLGSAVTGE GRSRSVDKIV LPWSALTSDQ
KGPAVWVIDP KTRAVSLRSV TVESYETSSI IVADGLKAGE RVVVDGGKML RPAEIVTYDG
ENA
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