| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3360 |
|---|
| Symbol | |
|---|
| ID | 3911162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3842918 |
|---|
| End bp | 3844033 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637885263 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_486967 |
|---|
| Protein GI | 86750471 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.421619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0114368 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGGA ACGATCTCCT TCGACGGCTG CGATTCGTCG GCGCGACGCT GGGGCTTTCG
GCGAGCCTCG CCGTGCCGGC GCTGGCGCAG GATCGCGTGG TCAATTTCTA CAACTGGTCG
AACTACGTCG CGCCCGGCGT ACTCGAGGAG TTCACCCGCG AAACCGGGAT CAAGGTGATC
TACGACACCT TCGACGGCAA CGAGACGCTG GAGACCAAGC TGCTCGCCGG CAAATCCGGC
TACGACGTCG TCGTGCCGAC CGCGTATTTC CTGCAGCGCC AGATCGGCGC GAAGGTGTTC
CAGAAGCTCG ACCCGACGAA GCTGCCCAAC CTGAAGAACG CCTGGGACGT GGTGACGAAG
AAGCTGGCGC TGTACGATCC CGGCAATCAC TATGCGGCCA ACTACATGTG GGGGACCACC
GGCATCGGCT ACAATGTCGG CGCAGTGAAG CGCATTCTCG GCGAGGGTGC GGTGATCGAC
AGCTGGGACA TCGTGTTCAA GCCGGAGAAT CTGGCGAAGT TCAAGGAGTG CGGCGTCCAG
ATGCTGGATT CCGCCGACGA CATCCTGCCG GCGGCGCTGA CCCGTCTCGG CCTCGATCCG
AACTCGACCA AGCAGCCGGA TCTGGAGAAG GCCGCCGATG CCGTCGCCAA GGTGCGGCCG
TCGGTGCGGA AGTTTCACTC GTCGGAATAT CTCAACGCGC TCGCCACCGG CGAAATCTGC
CTCGTCGTCG GCTGGTCCGG CGATATCAAG CAGGCGCAGG CGCGGGCGAC CGAAGCCAAC
AACGGCGTCG AAATCGGCTA CGCGATCCCG AAAGAAGGAG CGCAGATGTT CTTCGACAAT
CTGGCTATCC CGGCGGACGC CAAGAACGTC GCCGAGGCGC ACGAATTGAT CAACTTCCTG
TTTCGCCCCG AGATCGCCGC CCGCAATTCC GACTTCCTGT CCTACGCCAA CGGCAACAAA
GCCAGCCAGG AATTCGTCAA CCCGCGTATC TTGAACGACA AGACGATCTA TCCGGACGAA
GCGATGCAGG CGCGCCTGTT CGTCATCACC GCGCGCGACG CGGCGACGCA GCGCGTGATC
AACCGGCTGT GGACGCGGGT GAAGACCGGG CGGTGA
|
|---|
| Protein sequence | MMRNDLLRRL RFVGATLGLS ASLAVPALAQ DRVVNFYNWS NYVAPGVLEE FTRETGIKVI
YDTFDGNETL ETKLLAGKSG YDVVVPTAYF LQRQIGAKVF QKLDPTKLPN LKNAWDVVTK
KLALYDPGNH YAANYMWGTT GIGYNVGAVK RILGEGAVID SWDIVFKPEN LAKFKECGVQ
MLDSADDILP AALTRLGLDP NSTKQPDLEK AADAVAKVRP SVRKFHSSEY LNALATGEIC
LVVGWSGDIK QAQARATEAN NGVEIGYAIP KEGAQMFFDN LAIPADAKNV AEAHELINFL
FRPEIAARNS DFLSYANGNK ASQEFVNPRI LNDKTIYPDE AMQARLFVIT ARDAATQRVI
NRLWTRVKTG R
|
|---|
| |