| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3131 |
|---|
| Symbol | |
|---|
| ID | 3910932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3577689 |
|---|
| End bp | 3578528 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637885033 |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_486738 |
|---|
| Protein GI | 86750242 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.19818 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGGC TGAAGACCTT CCTGAGTCAC CCGACCGGCC TGATCGGCCT GGTGATCCTG
ATCGGCGTCA TCGTGCTCGC GGTCTTGGCG CCCGTGATCT TTCCCGAAGA CCCTTGGGAG
ATGGTCGCGG CGCCGTTCCA GCCGCCGGCC AGCGAGGGGC TGCCGCTCGG CTCCGACATG
CTCGGCCGGA ACGTCGCCGC GGGGATCGCC TACGGCGCCC GGGTATCGCT GACGATCGGC
GTCGCCTCGA CGCTGGCGGC GCTGTGCATC GGGGTGGTGA TCGGGGCGAT CGCCGGCTAT
TTCGGCGGCC GGGTCGACGA GCTGATGATG CGTATCACCG AACTGTTCCA GACCATTCCG
GGCTTCATCC TCGCCATCCT GCTGGTGGCC ACGATCGGCC CGACGCTGAC CAACGTGATC
ATCTCGATCG GTGCGGTGAG CTGGCCGCCG CTGGCGCGGC TGACGCGGGC GGAGTTCATG
CGCCTGCGCG GCCGCGAGTT CGTCCAGGCG GCGGTGTGTC AGGGCCAGGC GCCTCTGGTG
GTGGCGCTCC GGCACATCCT ACCCAATGCG ATCTCGCCGA TCATCGTCAC CGGCTCGCTG
ACGATCGCGA CCGCGATCCT GATCGAGAGT GCGCTCAGCT TCATGGGGCT CGGCGATCCC
AATCTGATGT CGTGGGGGCT GATGATCGGC GCGTCGCGCA CCGTGATCCG TCAGGCGTGG
TGGATGAGCA TGTTTCCCGG CATCGCGATC CTGCTGACCG TGCTGGCGAT CAATCTGGTC
GGCGAGGGGC TGAACGACAC CCTGAACCCG CGCATCTCGC GAAAGGCGCG CAACGCATGA
|
|---|
| Protein sequence | MDRLKTFLSH PTGLIGLVIL IGVIVLAVLA PVIFPEDPWE MVAAPFQPPA SEGLPLGSDM
LGRNVAAGIA YGARVSLTIG VASTLAALCI GVVIGAIAGY FGGRVDELMM RITELFQTIP
GFILAILLVA TIGPTLTNVI ISIGAVSWPP LARLTRAEFM RLRGREFVQA AVCQGQAPLV
VALRHILPNA ISPIIVTGSL TIATAILIES ALSFMGLGDP NLMSWGLMIG ASRTVIRQAW
WMSMFPGIAI LLTVLAINLV GEGLNDTLNP RISRKARNA
|
|---|
| |