| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3081 |
|---|
| Symbol | |
|---|
| ID | 3910882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3512229 |
|---|
| End bp | 3513197 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637884986 |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_486691 |
|---|
| Protein GI | 86750195 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.957751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTT CGATCGTGCG GCGACTGTTT CAGATCATCT CGCTCATCCT CGGCGTCATC
GTGATGAATT TCACGCTCAT CCAGATGGCG CCGGGATCGC TGCTCGACAT CATGACGTCC
GAGCAGCAGG TCACCGATCC GGCGACGTTG CAGCACCTCA AGCATTTGTA CGGCCTCGAT
CAGCCGGCGA TCGTGCAGCT GCTGCGCTAC ACCTGGTCGG TGTTCAGCTT CGACCTCGGC
TATTCGTATC GCCAGAACGC GCCGGTGTTC GACATCATCA TGGCGCAGCT GCCCTCGACG
CTGCTGCTGA TGCTGACGTC GCTCGGGGTG GCGGTGACGC TCGGGATGAT CGCCGGCGTC
ATCGCGTCGG TGAAGGTCAA CACGGCCTGG GACGTGGTGA TCTCACTGGC AGCGGTGTTC
TTCTTCGCCG CGCCGACGTT CTGGCTCGGA ATCATGCTGA TCATCTTCTT CGCCGTACAT
CTCGATTGGC TGCCGGTTGG CGGCATGACC ACGATCGGTG GGAAGTTCGG GCCGGTCGGG
CAGGTGGTCG ACGTGATCCG CCACCTGATC CTGCCGGCGC TGTCGCTCGG CCTGTTCTAC
GCCGCGATCT ACACGCGGGT GATGCGTGCC TCGATGCTCG AGGTGTTCTC GCTCGACTTC
GTCCGCACCG CGCGCGCCAA GGGCCTGAGC AAGACCCGCG TGATCCTGGC GCACGTCTTC
CGCAACGCGC TGCTGCCGGT CGTCACGCTG CTCGGCCTGC AGCTCGGGAC TGTCCTCGGC
GGCTCGGTGG TGATCGAGGC GGTGTTCTCC TGGCCGGGCA TCGGCAGCTT GATGCTCGAT
AGCGTGATGA GTCGCAATTA CCCGGTCGTG TTGGGCGTCT TCGTTCTGTC GGCGGTCGTC
GTCGCCGTCG CCAATCTGCT GGTCGATCTT GCCTACTACC GGCTTGATCC GCGAATCCGG
AGCCGATGA
|
|---|
| Protein sequence | MKRSIVRRLF QIISLILGVI VMNFTLIQMA PGSLLDIMTS EQQVTDPATL QHLKHLYGLD
QPAIVQLLRY TWSVFSFDLG YSYRQNAPVF DIIMAQLPST LLLMLTSLGV AVTLGMIAGV
IASVKVNTAW DVVISLAAVF FFAAPTFWLG IMLIIFFAVH LDWLPVGGMT TIGGKFGPVG
QVVDVIRHLI LPALSLGLFY AAIYTRVMRA SMLEVFSLDF VRTARAKGLS KTRVILAHVF
RNALLPVVTL LGLQLGTVLG GSVVIEAVFS WPGIGSLMLD SVMSRNYPVV LGVFVLSAVV
VAVANLLVDL AYYRLDPRIR SR
|
|---|
| |