| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2852 |
|---|
| Symbol | |
|---|
| ID | 3910645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3249096 |
|---|
| End bp | 3251282 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637884752 |
|---|
| Product | DEAD/DEAH box helicase |
|---|
| Protein accession | YP_486465 |
|---|
| Protein GI | 86749969 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1200] RecG-like helicase |
|---|
| TIGRFAM ID | [TIGR00643] ATP-dependent DNA helicase RecG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCCC GCCGCGGCGC ATTGCAATTG GCGCAAAATG CATCCAAGGC TGCGGGTCAC
ATCCGCCCCA ATCGAGCCGG CCCGATGCGT CCCGCTTTGC TCAATCCCCT GTTCGCCCCG
GTCACCGGCC TCACCGGCGT CGGTCCGAAG CAGGACAAGC TGTTTCGCTA TCTGCTGGAT
CGCGACGACA CCCCGCGGCT GGCCGATCTG CTGTTGCATC TGCCGGTGAG CGTGATCGAT
CGCCGCTCGC GGCCCAAGAT CCGCGACGCC CAGCCCGGCA CCGTGGTGAC GCTGGAAGTC
ACCGTCGACC GCCACCGCCC GCCACCACCC GGTCGCTCAC GCGCGCCCTA TCTGGTCTAT
GCCAGCGACG AGACCGGCGA CGTCATCCTG ACCTTCTTCC GCGCCAAGCC GGAGTTCGTC
GAGAAGCTGC TGCCGGTCGG CGCCAAGCGC TACGTCTCCG GCACCGGCCA GCTGTATGAC
GGCACGCTGC AGATCGTGCA TCCCGACCGC GTCGTCGACG AGGAAGGCTT CGCCAAGCTG
CCGAAGATCG ACCCGGTGTA TCCGCTCACC GAGGGGCTGG CGATCGGCTC GCTACGCCGC
GCGGTGGCGC AGGCGCTGAC CAGACTGCCG GCGCTGCCGG AATGGATCAG TCCCGAGGTG
CTGCGACGCT GCAGCTTTCC CGCCTTCGCC GAGGCACTGC AGCGCGTCCA TATCCCGCAT
GAGCCGACCG ACATCCTGCC CGACGGCCCG TTCTGGTCGC GCCTCGCCTA TGACGAATTG
CTCGCCGGAC AATTGGCGCT GGCGCTGGTG CGGGCACAGC TCCGTCGCCC GGCCGGCACG
CGCAATGCCG GCGACGGCCG GCTGCGCCAC AAGATCATCG ACGCGCTGCC TTATGCGCTG
ACGGCCTCGC AACAGGCCGC TGCCGCCGCG ATCGCGGAGG ATCTGCAGCA ACCTGTGCGG
ATGCTGCGGC TGCTGCAGGG CGACGTCGGC TCCGGCAAGA CCGTGGTGGC GCTGCTGGCC
GCCGCCGCCG TCGCCGAGGC CGGCAAGCAG GCGGCGTTGA TGGCGCCGAC CGAAATTCTC
GCGCGCCAGC ACATCAAGAC CATCGCGCCG CTGGCCGAAC GCGCCGGCAT GCAGGTCGCG
ATCCTCACCG GCCGCGAGAA GGGCAAGGAG CGTCGCGATC TGTTGGCGCG GCTCGAAGCC
GGCGAGATCG ACTTTCTGGT CGGCACCCAC GCGCTGATCC AGGACGACGT GACCTACAAC
TCGCTGGCGC TGGCCGTGGT CGACGAGCAG CATCGCTTCG GCGTCCGCGA GCGGCTGGCA
CTGACCTCGA AGGGCGACGC CGTCGACGTG CTGGTGCTGA GCGCGACGCC GATCCCGCGC
ACGCTGGTGC TGACCTATTT CGGCGACATG GACGTCTCGG AGTTGCGCGA GAAGCCCGCC
GGCCGCCAGC CGATCGACAC CCGCGCTTTG TCCGATACCC GCCTGCCCGA AGTGATCGAC
GGCATCGGCC GCGCCATCGC CGCCGGCAAG CGCGTCTACT GGATCTGCCC GCTGGTCGAG
GAATCCGAAA ACGTCAAGCT GACTGACGCC GAGCAGCGCT ACGAGTCGCT GCGGCAGCGC
TTCGGCGATC AGCAGGTCGG TCTGGTGCAC GGCCGGATGA AGGGCGCCGA CAAAGACCGC
GTGATGGCGC AGTTCGCCGG CGGCGAGATC AGCGTGCTGG TCGCCACCAC CGTCGTGGAA
GTCGGCGTCG ACGTGCCCGA GGCCAGTATC ATGGTGATCG AGAACGCCGA GCGCTTCGGC
CTCGCGCAAC TGCATCAATT GCGCGGTCGC ATCGGTCGCG GCAGCGAGGC CTCGACCTGC
CTGCTGCTGT ACAAGGAGCC GCTCGGTGAG ATGTCGGCGG CGCGGCTGCG GGTGATCCGC
GAAACCGCCG ATGGCTTCCG CATTGCCGAA GAAGATCTCA AGCTGCGCGG CGAAGGCGAC
GTGCTCGGCA CCCGCCAGAG CGGCCTGCCC GGCTACCGCA TCGCGCGCTC CGAGGTGCAC
GGCCAGTTGA TCACCCAGGC CCGCGACGAA GCGCTGCGCA TCCTCGAGGA CAATCCCAAG
CTCGAAGGCC CATCCGGCGA GGCGCTGCGC TGCCTGCTGT ATCTCTACGA ACGCGACGAG
GCGATTCCGC TGCTCGGCGC GGGGTAG
|
|---|
| Protein sequence | MSARRGALQL AQNASKAAGH IRPNRAGPMR PALLNPLFAP VTGLTGVGPK QDKLFRYLLD
RDDTPRLADL LLHLPVSVID RRSRPKIRDA QPGTVVTLEV TVDRHRPPPP GRSRAPYLVY
ASDETGDVIL TFFRAKPEFV EKLLPVGAKR YVSGTGQLYD GTLQIVHPDR VVDEEGFAKL
PKIDPVYPLT EGLAIGSLRR AVAQALTRLP ALPEWISPEV LRRCSFPAFA EALQRVHIPH
EPTDILPDGP FWSRLAYDEL LAGQLALALV RAQLRRPAGT RNAGDGRLRH KIIDALPYAL
TASQQAAAAA IAEDLQQPVR MLRLLQGDVG SGKTVVALLA AAAVAEAGKQ AALMAPTEIL
ARQHIKTIAP LAERAGMQVA ILTGREKGKE RRDLLARLEA GEIDFLVGTH ALIQDDVTYN
SLALAVVDEQ HRFGVRERLA LTSKGDAVDV LVLSATPIPR TLVLTYFGDM DVSELREKPA
GRQPIDTRAL SDTRLPEVID GIGRAIAAGK RVYWICPLVE ESENVKLTDA EQRYESLRQR
FGDQQVGLVH GRMKGADKDR VMAQFAGGEI SVLVATTVVE VGVDVPEASI MVIENAERFG
LAQLHQLRGR IGRGSEASTC LLLYKEPLGE MSAARLRVIR ETADGFRIAE EDLKLRGEGD
VLGTRQSGLP GYRIARSEVH GQLITQARDE ALRILEDNPK LEGPSGEALR CLLYLYERDE
AIPLLGAG
|
|---|
| |