| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2577 |
|---|
| Symbol | |
|---|
| ID | 3910369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2958333 |
|---|
| End bp | 2959082 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637884477 |
|---|
| Product | NADH dehydrogenase subunit E |
|---|
| Protein accession | YP_486191 |
|---|
| Protein GI | 86749695 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | [TIGR01958] NADH-quinone oxidoreductase, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.251247 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0688647 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTTC GTCGTCTGGC TCCCAAGGAG CTGCAGCCTG AAAGCTTCGC CTTCACCGAG
GAGAACCTCG CCTGGGCCAA GCGCGAGATT ACCAAGTACC CGCCCGCGCG CCAGTTCTCG
GCGGTGATCG CGATCATGTG GCGGGCGCAA GAGCAGTGCG GCGGCTGGCT TCCGGAAGCG
GCGATCCGCG TCATCAGCGA CATGCTCGAG ATGCCGCATA TCCGCGCGCT CGAAGTCGCG
ACCTTCTACA CGATGTTCCA GCTCAATCCG GTCGGTAAGA AAGCGCATGT TCAGGTCTGC
GGCACCACGC CGTGCCGGCT GCGCGGCGCC GGCGAACTGA TCGAAGTCTG CAAGAGCAGG
ATCCATCACG ACCCGTTCCA TCTGTCGGCC GACGGCGACT TCTCGTGGGA AGAGGTCGAA
TGTGCCGGCG CCTGTGTGAA TGCGCCGATG GTGCAGATCT GGAAGGATAC CTACGAGGAT
CTGACGCCGG AGAGCCTGAA CAAGGTGCTC GACGGTTTCG CCGCCGGGAA CCCGCCGAAG
CCCGGCCCGC AGAATGGCCG CCAGTACGCG GCGCCGATCA CCGGGCCGAC GACGCTGAAG
ACCGGTGGGA TCAACGTCGC CACCGACACC AATGACGGCC CGGCGCTGAC CGATCAAGAG
CCGAAGCGCA CCACCGAAGC CGCAAATACG CGAGAGCGGC CCGATCCGAA GGCGCCGGCC
GCCGACGCCA GCGAAAAGAA CCCGCCATGA
|
|---|
| Protein sequence | MSVRRLAPKE LQPESFAFTE ENLAWAKREI TKYPPARQFS AVIAIMWRAQ EQCGGWLPEA
AIRVISDMLE MPHIRALEVA TFYTMFQLNP VGKKAHVQVC GTTPCRLRGA GELIEVCKSR
IHHDPFHLSA DGDFSWEEVE CAGACVNAPM VQIWKDTYED LTPESLNKVL DGFAAGNPPK
PGPQNGRQYA APITGPTTLK TGGINVATDT NDGPALTDQE PKRTTEAANT RERPDPKAPA
ADASEKNPP
|
|---|
| |