| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2568 |
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| Symbol | |
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| ID | 3910359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2950177 |
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| End bp | 2951415 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884467 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_486182 |
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| Protein GI | 86749686 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.807298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.212557 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGGG GACACCTTCC GTCGCTTCCG TCCGCAAGAG GATGGTCGGT CATCGCCGGC
CTGTTGTGCG CGCCTTTAGT CCTGTCGGGA TGCAAGGAGC AGAACAAATA CGCGGCGCCG
CCGCCCACCA AGGTCACCGT CGCCACGCCC ACCCGATCGC CGGTCACGCT CTATGCCGAG
TTCACCGGCA ACACCGCCCC GGTCGCCTCG GTCGATCTGG AAGCGCGCGT GCAGGGCTTC
CTCGAGAGCA TCGACTATCG CGACGGCGAA GCGGTGAAGA AGGGCCGCGT GCTGTTCAAG
ATCGAACCGG CTCAGTATCA GGCCCAGGTC GATCTGCAGC AGGCCCAGCT CGACGGCGCC
AAGGCCAAGC AGGTCAACGC GCAGCGCGAA TACGACCGGC AGGCCACCCT CGGGCAGAAG
GAGGTCGCCA CCCAGCGCAA TGTCGACGAC GCCCAGACCA ATCTGGCGTC GGCGAATGCC
CAGGTCGCGG CCAGCGAGGC CTCGCTCAAG CTCGCCAAGA CCTCCCTCGC CTATGCCACC
GTGACCGCGC CGTTCGACGG CGTGGTGACG CGCCGCCTCG CCAATATCGG CGCGCTGGTC
GGCTCGTCCG GTCCCACCAA GCTCGCCACC ATCCTCCAGG TCGATCCGCT CTACGTCTAT
TTCAACATCA CCGAGCAGCA GCAGATCAAT CTGCGCGATG CGCTGGCCAA GCAGGGCAAG
ACCCTGAAGA CCATGCGCGA AGACGGGATG GAAATGCCGA TCGAGGTCGC GCTGTCGGCC
GACACCGCAT TCCAATATGC CGGCAAGGTC GACTACATCG CGCCGCAGGT CGAGACCGCC
ACCGGGACGC TGCAATTGCG CGGCGTGCTG GAGAACAAGA ACGTGGCGCT GGTGCCCGGC
CTGTTCGTCC GGGTCCGCGT CCCCGTCGGC AAGCTCGACG ACGCGCTGCT GGTCGACGAC
ACCGCGGTGA TGTCCAACCA GACCGGCAGC TACGTCATGG TGGTCGGCAA CAACAACGTC
GTCGAGCAGC GCCAGGTGAC CCCCGGGGCG CTGCAGGGGC AATTGCGTGT GATCACCAAA
GGCCTGTCCG CCGACGACAA GGTTGTGATC GGCGCGATCC AGCGCGCGGT GGCCGGCAAC
ACCGTGGCGC CGGTGTCGGG CGCCATGGCC GCCGCCCCCA CCGGCCCCAA GCCGGCCCCC
GCAAGTCTGA CGCCCGGAAC CGGCGCGTCC AAGCCCTGA
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| Protein sequence | MARGHLPSLP SARGWSVIAG LLCAPLVLSG CKEQNKYAAP PPTKVTVATP TRSPVTLYAE
FTGNTAPVAS VDLEARVQGF LESIDYRDGE AVKKGRVLFK IEPAQYQAQV DLQQAQLDGA
KAKQVNAQRE YDRQATLGQK EVATQRNVDD AQTNLASANA QVAASEASLK LAKTSLAYAT
VTAPFDGVVT RRLANIGALV GSSGPTKLAT ILQVDPLYVY FNITEQQQIN LRDALAKQGK
TLKTMREDGM EMPIEVALSA DTAFQYAGKV DYIAPQVETA TGTLQLRGVL ENKNVALVPG
LFVRVRVPVG KLDDALLVDD TAVMSNQTGS YVMVVGNNNV VEQRQVTPGA LQGQLRVITK
GLSADDKVVI GAIQRAVAGN TVAPVSGAMA AAPTGPKPAP ASLTPGTGAS KP
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