| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2377 |
|---|
| Symbol | |
|---|
| ID | 3909377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2730447 |
|---|
| End bp | 2731766 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637884276 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_485993 |
|---|
| Protein GI | 86749497 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.23197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.656005 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATGGCAA GTGAACTGTT TCGACGGAGA GCCCGGACCC GGTCCCTGCT CGGTATCGCC
TGTGTGATTG CAGCACTCGC CCTCCCCGCC GCCCCCGCCC TCGCCGCGGA TTGCCCCGGC
AATCCGGGCG CGCTCGGCAC CTCCCGCACG CTGGTCGTCG ATCCGCGCGA GCATCCGCGG
ATCGGCACGA TGCAATATGC CGAGACGCTG CCGCTGCGGG ACCACGAGGT GGTGCTGACC
TTCGACGACG GCCCGCTGCC GCGCTACAGC AATGCCGTGC TCGAGATCCT CGCCAGGGAG
TGCGTCCAGG CGACGTTCTT CGTGGTGGGA CGGATGGCGA AGGCCTATCC GGAAGGCGTC
CGCAGGATGC GCGATGCCGG CCACACCATC GGCACCCACA GCCAGAACCA TCCGCTGAGT
TTCAACCGGA TGACCGCCGA GCAGGCCAAG CAGGAAGTCG ACGACGGCAT CGCTTCGGTC
GCAGCCGCGC TCGGCAGCCG CGCGGCGATC GCACCGTTCT TCCGCATTCC CGGCCTGCTG
CGGGCCGAAG CCGTCGAATC CTATCTCGGC TCGCAGGGCA TCCAGACCTG GAGCGCCGAC
TTCCCCGCCG ACGACTGGCG GCACATCTCG CCCGAGGCCG TCTACAGCCT GGCGTTGAGC
CGGCTGCAGG CCAAGGGCCG CGGCGTGCTG CTGCTGCACG ACATCCAGCC GCGCACGGTG
GCGGCGCTGC CGCACATCCT GCACGAGCTG AAGGCCCGCG GCTTCCGCAT CGTGCATGTC
GTGCCGGCGA CGCCGGATCG CCCGAAGACG CCGACCGAGC CGTCGCAATG GCGCCTGCAC
CCGGTTACCG AGCAGGTCGC GATCTCGCAT TGGCCGAAGG TGCCGCGCTT CAGCTATGCC
AGCGCCGAGA TGCTGCCGGG GCCGTCGATC GCCGATCTCG GCCTCGACAT CGGCCGCGTG
CCGGAGCCGT TCGATGGCCT CCGGCATCTC GCACGCGGCC AGGTGCCGCT GCCGAAACCC
GCGCCGTGGC CGCGCCAGCG GTCGGCCGAG ACCTCGACCA ATCTGATCAC CTTCCCGATT
CCGGCCGCAT CGCTGTTCAG CATTCCCGAG AAATCCCAGC CGGAATTCCG CGCAATGACT
CGCCAGCCCG GGAAGCGGGC CGCGCACGAC ACCGCTCCGC AGACCGCGCA GACGGAGCCG
CGTGCGATCG AGATCAGCGC TGCCGCCCGT CCGATTTCCG GCAGCGCGGC AATCGCCCCC
GCCACCCTGC AACGCGGCCC GATCACCGTC ACGGCACGGC CGCGACCGCT CAATCACTGA
|
|---|
| Protein sequence | MMASELFRRR ARTRSLLGIA CVIAALALPA APALAADCPG NPGALGTSRT LVVDPREHPR
IGTMQYAETL PLRDHEVVLT FDDGPLPRYS NAVLEILARE CVQATFFVVG RMAKAYPEGV
RRMRDAGHTI GTHSQNHPLS FNRMTAEQAK QEVDDGIASV AAALGSRAAI APFFRIPGLL
RAEAVESYLG SQGIQTWSAD FPADDWRHIS PEAVYSLALS RLQAKGRGVL LLHDIQPRTV
AALPHILHEL KARGFRIVHV VPATPDRPKT PTEPSQWRLH PVTEQVAISH WPKVPRFSYA
SAEMLPGPSI ADLGLDIGRV PEPFDGLRHL ARGQVPLPKP APWPRQRSAE TSTNLITFPI
PAASLFSIPE KSQPEFRAMT RQPGKRAAHD TAPQTAQTEP RAIEISAAAR PISGSAAIAP
ATLQRGPITV TARPRPLNH
|
|---|
| |