| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2170 |
|---|
| Symbol | |
|---|
| ID | 3909950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2465193 |
|---|
| End bp | 2466311 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637884064 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_485787 |
|---|
| Protein GI | 86749291 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0218486 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGCA ATTTCGTCAC CGGAACCGCG GTTCTGGCGC CGGCCGGCAT GCTCGGCGAA
TTGTCCCAGG GCCTCGGCGT CAGCATCCGC GACGCCGGCC TTCTGATCAC CTTCGGCGCG
GTGGTGCTGT GCATCGGCTC GCCGCTGTCG GCGTGGCTGA CCTCTAGGAT CGACCGCCGG
CTGCTGCTGA CGACGACGCT CTTGGTGCTG GCGCTCGGCA ATCTCGCCTC GGCCTTGGCG
CCGAACTACG CCGTGTTGCT GGCCCTGCGG ATCGCGATGC TCGCGGTCGG GGCGCTGTAT
ACGCCACAGG CGGCCGGCGC GGTGGCGCTG CTGGTGGCGC CGGAGAAGCG CGGCGGCACC
ATGGCCTATG TGTTTCTCGG CTGGTCGCTG GCGGTGGCGC TGGGGGTGCC GATGGTCGCC
TTCGTCGCCG GCCATTTCGG CTGGCGCGAG GCCTATGGCC TGCTCGGCGC GATCGGCCTG
ATGTCGTTCG TGCTGCTGTG GGCGCGGCTG CCGGGCGGGC TGCGCGCGAC GCCGGTCGAT
CTGTCGACCT GGGCCGCGGT CGGGCGCAAC CGCCGGGTTC TCAAGCTGCT CGGCGTGTCG
TCGCTGCAGA CCTCCGGGCA GTTCGTGGTG TTCACCTATT TCGGGCCGCT GCTGACCGGG
CTCACCGGCG CCGGCCCCGC CGAGATCGGG CTGGTGTTCG CGCTCTACGG CGTGTTCGGC
TTCGTCGGCA GCGTGATCGC CAGCCGGATC GTCGACGGCT GGGGCTCCTA CAACACTTCG
GCGCTGTTCA CCGCCTTCAT GCTCGCCGGC ATCGCCGGCT GGACGTTCGG CGCCGGCCAT
TTCGCCGTGA TGGCGGCGTC GGTGGCGATC TGGGGGCTGG GCTTCGCGGC GGCGAATTCG
ATGCAGCAGG TGCGGCTGCT CACCGCCGAT CCGGCGCTGG CGGGCGTCAC CGTGTCGCTC
AACACCTCGG TGCTGTATGT CGGCCAGGCG ATCGGCTCGG CGATCGGCGG CGCGCTGTTC
GCGGCCGGCC TGATGCACGT CAACGGCTAC GTCTCGACCG CGGTGATGAC CTGCGCGCTG
CTCGCGGTGC TGTTCGCGAC GCGGGAGACC AATCGGTAA
|
|---|
| Protein sequence | MLGNFVTGTA VLAPAGMLGE LSQGLGVSIR DAGLLITFGA VVLCIGSPLS AWLTSRIDRR
LLLTTTLLVL ALGNLASALA PNYAVLLALR IAMLAVGALY TPQAAGAVAL LVAPEKRGGT
MAYVFLGWSL AVALGVPMVA FVAGHFGWRE AYGLLGAIGL MSFVLLWARL PGGLRATPVD
LSTWAAVGRN RRVLKLLGVS SLQTSGQFVV FTYFGPLLTG LTGAGPAEIG LVFALYGVFG
FVGSVIASRI VDGWGSYNTS ALFTAFMLAG IAGWTFGAGH FAVMAASVAI WGLGFAAANS
MQQVRLLTAD PALAGVTVSL NTSVLYVGQA IGSAIGGALF AAGLMHVNGY VSTAVMTCAL
LAVLFATRET NR
|
|---|
| |