| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2008 |
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| Symbol | |
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| ID | 3909514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2283424 |
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| End bp | 2285568 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637883902 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_485627 |
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| Protein GI | 86749131 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.843308 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAAG CGCCGAAGCC CGCCCCCGAC ATCGCCACCC TCACCAAAGC GAAAGCCAAG
GTGGAGGCGA TGCGGTTGCG GCTCGAGATC GAGCGGCACA ACAGCGCGTA CTACCAGCAC
GACGCGCCGA CGGTTTCGGA CGCGGAGTAC GATGCGCTGC GGCGCAGGCT GGAGGCGATC
GAGGCGAAAT TCCCCGAGCT CGTCAGCGCG TCGTCGCCGA CACAGACGGT GGGCGCGGCG
CCGGCGCGTG GTTTCGCCAA GGTGCAGCAC GCGGTGCCGA TGCTGTCGCT CGGCAACGCC
TTTGCCGACG ACGAGGTCAC GGAATTCGTC GAGCGCGTGC AGCGTTTCCT CCGGCTCGAT
GCGGTGCCGT CGATCGTCGC CGAGCCGAAG ATCGACGGGC TGTCGCTGTC GCTGCGTTAC
GAGCACGGCG AATTGATGCG CGCGGCGACG CGGGGCGACG GCTTCACCGG CGAGGACGTC
ACCGCCAACG TCCGCACTAT CGCGGATATT CCGACCACGC TGAAGGCGAA GACGATCCCC
GCCGCCTGCG AGCTGCGCGG CGAAGTCTAC ATGCTGAAGC AGGATTTCCT CGCGCTCAAC
AAGCGGCAGG AGGAGGCCGG CGACACCGTG TTCGCCAATC CGCGCAATTC CGCCGCCGGC
TCGCTGCGGC AGAAGGATGT TGCGATCACC GCGTCGCGGC CGCTGAAATT CTTCGCCTAT
GCGTGGGGCG AGATGAGCGA CTACCCGATG GACGAGCCGA CCCAGTTCAA GATGCTCGGC
TGGCTGAAAC AGGCCGGCTT CGTCGTCAAT CCCGAGATCA CGCTGTGTAC CAGCGTCGAC
GACGCGCTCG CATTCTATCG CCGGATCGGC GAGCAGCGCG CGGCGCTGCC CTACGACATC
GACGGCGTGG TCTACAAGGT CGATCGGCTC GACTATCAGG AACGCCTCGG CTTCGTCTCG
CGCAGTCCGC GCTGGGCGAT CGCGCACAAA TTCGCCGCCG AGCAGGCGAC CACGGTGCTG
GAGAAGATCG ACATCCAGGT CGGCCGTACC GGCGCGCTCA CTCCGGTGGC ACGATTGCAG
CCGGTGACGG TGGGTGGCGT GGTGGTGCAG AACGCGACGC TGCACAACGA GGACTACATC
AAGGGTCTCG GCAATGACGG CTCGCCGCTG CGCGACGGCG TCGACATCCG CGAGGGCGAC
ACCGTGGTGG TGCAGCGCGC CGGCGACGTG ATTCCGCAGA TCGTCAGCGT CGTGCTCGAC
AAGCGGCCGG CCGACGCGAC GCCCTATCAC TTCCCGCACA AATGCCCGGT GTGCGGCAGC
CACGCGGCGC GCGAGGAGGG CGAGGCGGTG TGGCGTTGCA CCGGCGCGCT GATCTGTCCG
GCGCAGGCGG TGGAGCGGCT GAAGCATTTC GTCTCGCGGC TGGCCTTCGA CATCGACGGG
CTCGGCGAGA AGCAGATCGT GCTGTTCCAC GAACGCGGAT GGGTGAAGGA ACCCGCCGAC
ATCTTCACGC TGCAGGCGCG CAACGCCGCG CTGAAGCTCG AAGATATCGA AGGCTATGGC
GAGACCTCGG TGCGCAATCT GTTCGCGGCG ATCGACGCGC GGCGCACCAT CGAGCTGCAT
CGCTTGATCT TCGCGCTCGG CATCCGCCAT GTCGGCGAGG GCAATGCGAA GCTGCTGGCG
CGGCACTACG GCACGCTGGA TGCCTTCCTG GCGGCGATGC GCGCCGCCGC GGAAGGGCAG
ACTGAGGAAG GCAATACGTC GGAGGCGTAT CAGGATCTCG ACAATATCGC CGGCATCGGC
GAGGTCGTCG CTGCCGCTGT GGTCGAGTTC TTCGCCGAGC CGCGCAACGT CGCGGCGCTC
GATGCGCTGC TGGCCGAACT GAAGGACGTG CTGCCGGCCG AGCAGGCGCG GCGCGACACC
GCCGTCGCCG GCAAGACCGT GGTGTTCACC GGATCGCTGA CGAAATTCAC CCGCGACGAA
GCCAAGGCGG CGGCGGAGCG ACTGGGCGCC AAGGTCGCCG GCTCGGTGTC GAAGAAGACC
GACTACGTCG TCGCCGGCGC GGACGCCGGA TCGAAGCTCA CCAAGGCGAA AGACCTCGGC
GTCGCGGTGT TGACCGAGGA CGAGTGGCTG GCGCTGATCT CTTGA
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| Protein sequence | MTKAPKPAPD IATLTKAKAK VEAMRLRLEI ERHNSAYYQH DAPTVSDAEY DALRRRLEAI
EAKFPELVSA SSPTQTVGAA PARGFAKVQH AVPMLSLGNA FADDEVTEFV ERVQRFLRLD
AVPSIVAEPK IDGLSLSLRY EHGELMRAAT RGDGFTGEDV TANVRTIADI PTTLKAKTIP
AACELRGEVY MLKQDFLALN KRQEEAGDTV FANPRNSAAG SLRQKDVAIT ASRPLKFFAY
AWGEMSDYPM DEPTQFKMLG WLKQAGFVVN PEITLCTSVD DALAFYRRIG EQRAALPYDI
DGVVYKVDRL DYQERLGFVS RSPRWAIAHK FAAEQATTVL EKIDIQVGRT GALTPVARLQ
PVTVGGVVVQ NATLHNEDYI KGLGNDGSPL RDGVDIREGD TVVVQRAGDV IPQIVSVVLD
KRPADATPYH FPHKCPVCGS HAAREEGEAV WRCTGALICP AQAVERLKHF VSRLAFDIDG
LGEKQIVLFH ERGWVKEPAD IFTLQARNAA LKLEDIEGYG ETSVRNLFAA IDARRTIELH
RLIFALGIRH VGEGNAKLLA RHYGTLDAFL AAMRAAAEGQ TEEGNTSEAY QDLDNIAGIG
EVVAAAVVEF FAEPRNVAAL DALLAELKDV LPAEQARRDT AVAGKTVVFT GSLTKFTRDE
AKAAAERLGA KVAGSVSKKT DYVVAGADAG SKLTKAKDLG VAVLTEDEWL ALIS
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