| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1979 |
|---|
| Symbol | |
|---|
| ID | 3909484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2248369 |
|---|
| End bp | 2249019 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883873 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_485598 |
|---|
| Protein GI | 86749102 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.28862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCAC CGGCTACCAC CGCCCAGGCG CCTCATGCCG ACGACGACAG CGTCAAGCGC
CGTCAGATCG TCAAGGGCGC GCGCGCGGTG TTTCTGGAAC AGGGCTTCGA CGGCGCCAGT
ATGGGCGAGA TCGCCCGCGC CGCCGGCGTC TCGAAGGGGA CGCTGTACGT CTATTTCGCC
GACAAGAATT CGCTGTTCTG CGAGATCATG GAGCAGGAAA GCCTCGCCCA GGGGATGCTG
GCGTTCGACT TCACCCCGGA GCGGGAGGTC GAAGCCACCC TCAAGGCCTT CGGCACCGCC
TATATCCAGG CGCTGTGCAA TCCGCGCGGG GCGTCGGCGA TCCGGACGGT GATGGCGATC
GCCGAACGCA TGCCGGAAAT CGGACAGCGC TACTACGAGC GGGTGATCGC CAATTCGCTC
GGGCGGTTCG CGCGCTATCT CGAACTCCAC GTTCAGTCCG GCGAGTTGGA GATCGGCAAC
TGCCAACTCG CCGCCGCGCA ATTCACCAAA CTGTGCCAGG CGACCCTGTT TCTGCCGTTC
ATCTTCCAGA TGACCGAGAC GCCCTCGCCG GCGCGGATCG CCGAGGTGGT GGACAGCGCG
ACGCGCATGT TCCTCGCCGC CTATCGGGCG AAGCCGGACG CCGCTGACTA A
|
|---|
| Protein sequence | MVAPATTAQA PHADDDSVKR RQIVKGARAV FLEQGFDGAS MGEIARAAGV SKGTLYVYFA
DKNSLFCEIM EQESLAQGML AFDFTPEREV EATLKAFGTA YIQALCNPRG ASAIRTVMAI
AERMPEIGQR YYERVIANSL GRFARYLELH VQSGELEIGN CQLAAAQFTK LCQATLFLPF
IFQMTETPSP ARIAEVVDSA TRMFLAAYRA KPDAAD
|
|---|
| |