| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1819 |
|---|
| Symbol | |
|---|
| ID | 3908978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2081748 |
|---|
| End bp | 2082767 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637883713 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_485438 |
|---|
| Protein GI | 86748942 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.381464 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCG ATCGTTGTGA CCCGAGCTTG GCCCCGCTGC TGGGGTCGGC ATTGCTGAAC
ATCTATGCGC TCTCGCGCGG CACCGAAGTC GGCCGGTTTC AGCAGGCCGC TTTGCAGCGC
GTGGCCGAAG ACCTTCCTTT CCATTCTGCA TGGTGGGGCA TGGCGCAGGC CCAGCCCGGT
GGCGGTTTTG CCCTGCACAG TTCGTTTCGC TACGCGCTCC CGGAACATTT CGTTGCGAGT
TGGGAGAAGG TTGCGCTGGA CGACGACGTG GCGCGCACGG TCGCGGCGAG GCCAGGCGCG
ACAGGGCGAT TTTCGCGGGA TGATCTCGGC CGCACCCGCG GTTTGGCGCA GATGTCGGAG
CGGTACGATA TCGGCAGCAT TCTCTCGACG GTCATCTTTG ATCGCCGGCT CGGCGTCGCT
ACTTTTCTGT CGCTGTATCG GCGGGTGACG GCGCCTGGCT TCGGCGAGGC CGAGCGCGAC
TTCAAGGAGT TGCTGATGCC GCATCTGACC GCGGCGTGGC ACGCCAATTG GCTACAGCAT
TTCGACGGGC TGCGAAGCAT CGACGAGCAT CGCGGTGCCG GCTTGGCGCT GGCTGATCGT
CGCGGCATTC TGCATATCGC CGACGCCAGC TTCGCCGAAC TGATGCGCTG CGAATGGGCG
GGCTGGAACG GGCCCGCATT GCCGCCAGCC GTGCTCGCCA GTGCCGGAGG CGAGGCTGCG
TATCAAGGGC GCGGGCTCCG CGTCGGCAGT TCGCGTGAGG GTGATCTGAT CGTGTTCCAC
GCCCGGCCGC GGACGCCACT CGACCTCCTG TCCACGCGAG AGGCCGAGAT CGCGGCGTGC
TACGGGCTCG GACTATCCTA CAAGGAAATC GCCGCCCGCC TGGCGTGCTC GCCCTATACT
GTGCGTCATC ATCTGCGCGG CATCTACGAC AAGCTCGGCG TCTCCAACAA GGCGGCGCTC
GCCCGCCTCG CCGGGCAGAT CGCGGCGCAG CCCTCGGCGG GTGGAACATC TGACCGATAG
|
|---|
| Protein sequence | MPRDRCDPSL APLLGSALLN IYALSRGTEV GRFQQAALQR VAEDLPFHSA WWGMAQAQPG
GGFALHSSFR YALPEHFVAS WEKVALDDDV ARTVAARPGA TGRFSRDDLG RTRGLAQMSE
RYDIGSILST VIFDRRLGVA TFLSLYRRVT APGFGEAERD FKELLMPHLT AAWHANWLQH
FDGLRSIDEH RGAGLALADR RGILHIADAS FAELMRCEWA GWNGPALPPA VLASAGGEAA
YQGRGLRVGS SREGDLIVFH ARPRTPLDLL STREAEIAAC YGLGLSYKEI AARLACSPYT
VRHHLRGIYD KLGVSNKAAL ARLAGQIAAQ PSAGGTSDR
|
|---|
| |