| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1570 |
|---|
| Symbol | |
|---|
| ID | 3908769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1768216 |
|---|
| End bp | 1768914 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883466 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_485191 |
|---|
| Protein GI | 86748695 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.687597 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTCG AGGTCAAGGA TCTGCACGCT TACTACGGCA AGAGCCACAT TCTGCAGGGC
GTCGACATGC ATATCGACGC CGGCGAAGTG GTCAGCCTGC TCGGCCGCAA CGGCGTCGGC
CGCTCCACCA CCGTCAAGGC GATCATGGGC GAGGTGCCGC CGCACGGCAC GATCAATTTC
AAGGGCAAGA ACATCGCCGG CCTGCCGAGC CACAAGATCG CGCATCTCGG CCTCGGCTAC
GTGCCCGAGC ATCGCGATAT CTTCCCGGGC CTGACGGTCC GGCAGAACCT GATGCTCGGC
GTCAAGAATC CGCGCAACCC TGGCAAATGG CGGCTCGACG ACATGCTCGA CATGTTCTCG
AACCTGAAGG AGCGCGCCGA CACGCCAGCC GGTGTGCTGT CCGGCGGCGA GAAGCAGATG
CTGACGATCT GCCGGACGCT GATGGGCGAC CCCGAACTGG TGATGATCGA CGAGCCGACC
GAAGGGCTGG CGCCGATCAT CGTCCAGCAG GTCGGCGATC TGATCGCCGA AATCGCCCGC
CGCGGCGTCG CCATCCTGCT GGTCGAGCAG AAGCTGTCGA TCGCCATGCG GATCTCGCAC
CGGGTCTACG TCATGGGCCA CGGCCAGATC GTGTTCGAGG GCAGCCCCGC CGACCTCAAG
GACAACGCCG CGGTGCGCAA GGAGTGGCTC GAGGTTTGA
|
|---|
| Protein sequence | MMLEVKDLHA YYGKSHILQG VDMHIDAGEV VSLLGRNGVG RSTTVKAIMG EVPPHGTINF
KGKNIAGLPS HKIAHLGLGY VPEHRDIFPG LTVRQNLMLG VKNPRNPGKW RLDDMLDMFS
NLKERADTPA GVLSGGEKQM LTICRTLMGD PELVMIDEPT EGLAPIIVQQ VGDLIAEIAR
RGVAILLVEQ KLSIAMRISH RVYVMGHGQI VFEGSPADLK DNAAVRKEWL EV
|
|---|
| |