| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1353 |
|---|
| Symbol | |
|---|
| ID | 3908458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1542990 |
|---|
| End bp | 1543949 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883247 |
|---|
| Product | respiratory-chain NADH dehydrogenase, subunit 1 |
|---|
| Protein accession | YP_484974 |
|---|
| Protein GI | 86748478 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1005] NADH:ubiquinone oxidoreductase subunit 1 (chain H) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.370481 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.170717 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGCC TCATCATCAC CGCGATCATT TCGGCCGTGC TGATCATGGC GCTGCTGGTG
GTCGCCGGCA CGTTTACATG GGTTGAGCGG CGGCTGCTCG GCTTCGTGCA GGAGCGCTAC
GGCCCCAACC GCGTCGGCCC GTTCGGCTCG CTGCAATGGG TCGCCGACAC CGTCAAGATT
CTGACCAAGG AAGACCGGCC GCCGCCCGGC GCCGACAAGC TCACTTACAT CCTCGCGCCA
GCCATCGCCG CGACGCCGGT GCTCGCCGGC TTCGGCGTCG TCGCCTTCGG CGACGGGCTG
GTGCTCGCTC CCGTCGATGT CGGCGTACTG TTTCTGCTCG GCATGATGGG GCTCACCGCC
TACGCCGCGA TGCTCGGTGC CTGGGCGTCG AACAACCGGT TCTCGATGAT GGGCGGCATG
CGTGCGGCGG CACAGATGCT GGCCTACGAG GTGTTTCTCG GCCTGTCGCT GATGGGCGCG
GTGATGCTCG CAGGCTCGCT GTCGATGCAC GCGATCGTCG AAGCACAGCG CGACGTCTGG
TTCGTGGTGC TGCAGCCGCT CGGCGCGGCG CTGTTCTGCA TCGCCGGCGT CGCGGCCGCG
CATCGTCTGC CGTTCGACCT GCCGGAATCC GAGAACGATC TCGTCGCCGG CTTCATCACC
GAATACACCG GCATGTCGTT CGGCCTGTTC TTCCTCGGCG AATATCTGGC GGTGCTGCTG
GTCTCGGCGC TGGCGGTCAC GCTGTTCTTC GGCGGTTGGC TCGGGCCATG GTTGCCGGGG
CCGATCTGGT TCGGCCTCAA GACCGCGGTG ATCGCCGTGG TGTTCGTCTG GCTGCGCGCG
ACGCTGCCGC GGCCACGTTA CGATCAGTTG CTCGGCTTCG CCTGGAAGAT CGCGCTGCCG
CTGTCGCTGC TCAACCTGCT GCTGACCGGC ATCGTCGTGG TGGCGAGGAG CGCGCCATGA
|
|---|
| Protein sequence | MIGLIITAII SAVLIMALLV VAGTFTWVER RLLGFVQERY GPNRVGPFGS LQWVADTVKI
LTKEDRPPPG ADKLTYILAP AIAATPVLAG FGVVAFGDGL VLAPVDVGVL FLLGMMGLTA
YAAMLGAWAS NNRFSMMGGM RAAAQMLAYE VFLGLSLMGA VMLAGSLSMH AIVEAQRDVW
FVVLQPLGAA LFCIAGVAAA HRLPFDLPES ENDLVAGFIT EYTGMSFGLF FLGEYLAVLL
VSALAVTLFF GGWLGPWLPG PIWFGLKTAV IAVVFVWLRA TLPRPRYDQL LGFAWKIALP
LSLLNLLLTG IVVVARSAP
|
|---|
| |