| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1019 |
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| Symbol | |
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| ID | 3909143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1167546 |
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| End bp | 1169123 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882912 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_484640 |
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| Protein GI | 86748144 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAGA ACAAGACGGA TCGCAACGAC ATCGACGACA CCCCGAAATC CGAGGCGCAA
CTACGCCGGA TCATGAGGCC GCGGCGCTTT GCTCTGCTGG CGTCCGCCGC AGCGCTGAGC
GCCGCGCTGG TCACCGGCGG ATATATGACG CACGAGTTTC CGTCGTTCGC GTCGCCCGCG
CTCGCGGCCG AAGCGGCTGC GCCGACCGGC ATGCCTTCCG GCTTCGGCGA TCTCGTCAGC
AAGGTGAAGC CGGCGGTGAT CTCGGTGCGC GTCAAGATCG ACGAGGACAG CCGCACCACG
CCGCTGATCC GCAACGACGA CAGCGACGAC AATGCCAATC CGGGGATGGG CGACGATCAG
TTGCGTCCGT TCCTCAAGCA GTTCGGCTTC CGCGGCGAAG GCGCCATGCC GAAGCGGCAC
GAGATGATCA CCGGCGAGGG CTCCGGCTTC TTCATCTCGC CGGACGGCTA CGCGGTCACC
AACTATCACG TCGTCGATCA CGCCAAGTCG GTGCAGGTCA CGACCGATGA CGGCGCCGTC
CACACCGCCA AGGTCGTCGG CACCGACAAG AAGACCGATC TGGCGCTGAT CAAGGTCGAC
GGCAAGAGCG ACTTCACTTA CGTGAAATTC GCCGATCAGC CGGCGCGGGT CGGCGACTGG
GTGGTGGCGG TCGGCAATCC GTTCGGCCTC GGCGGCACCG TCACGGCCGG CATCGTCTCG
GCGCGCGGCC GCGACATCGG CTCCGGTCCC TATGACGACT ACGTCCAGAT CGACGCGCCG
ATCAACAAGG GCAATTCCGG CGGCCCGGCG TTCGACACCA GCGGCAACGT CATCGGCGTC
AACACCGCGA TCTATTCGCC CTCCGGCGGC TCGGTCGGCA TCGGCTTCGA CATTCCGGCG
GCGACCGCCA AGCTCGTCAT CGCGCAGTTG AAGGACAAGG GCGTGGTGAC GCGCGGTTGG
CTCGGCGTGC AGGTGCAGCC GGTGACCGCC GAGATCGCCG ACAGCATGGG GCTGAAGCAG
GCCCGCGGCG CGCTGGTCGA CAGCCCGCAG GACGGCAGCC CGGCCGCCAA GGCGGGGATC
GCCGCCGGCG ACGTCATCAC CGCGGTCAAT GGCGCGGAGA TCAAGGACTC GCGCGCGCTG
GCGCGGACCA TCAGCATGAT GGCGCCGGGC AGCGCGGTGA AGCTCGACGT GCTGCACAAG
GGTGACAGCA AGACTGTGAC GCTCAGCCTG GCGGAGATGC CGAACGAGAG CGCGAAAGTC
GCCGACAGCG GCGATGCCGG GCGCGAGTCC GGCCGGCCCT ATCTCGGCCT GCGCGTCGCG
CCGGCCAGCG AGGTTGGCGA CTCCGGCCAG AAGGGCGTCG TCGTCACCGG CGTCGACCCC
GAAGGCCCGG CGGCCGATCG CGGGCTGCGC AGCGGCGACG TCATCCTCGA CGTCGGCGGC
AAGCCGGTCG CCAATTCCGG CGACGTCCGC GACGCGCTGA AGCAGGCCAG CGAGCACGGC
AAGAAGACCG TGCTGATGCG GGTCAAGACC GCGGATTCCG CCGCGCGCTT CGTCGCGGTG
CCGATCGCCA AAGGCTGA
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| Protein sequence | MNQNKTDRND IDDTPKSEAQ LRRIMRPRRF ALLASAAALS AALVTGGYMT HEFPSFASPA
LAAEAAAPTG MPSGFGDLVS KVKPAVISVR VKIDEDSRTT PLIRNDDSDD NANPGMGDDQ
LRPFLKQFGF RGEGAMPKRH EMITGEGSGF FISPDGYAVT NYHVVDHAKS VQVTTDDGAV
HTAKVVGTDK KTDLALIKVD GKSDFTYVKF ADQPARVGDW VVAVGNPFGL GGTVTAGIVS
ARGRDIGSGP YDDYVQIDAP INKGNSGGPA FDTSGNVIGV NTAIYSPSGG SVGIGFDIPA
ATAKLVIAQL KDKGVVTRGW LGVQVQPVTA EIADSMGLKQ ARGALVDSPQ DGSPAAKAGI
AAGDVITAVN GAEIKDSRAL ARTISMMAPG SAVKLDVLHK GDSKTVTLSL AEMPNESAKV
ADSGDAGRES GRPYLGLRVA PASEVGDSGQ KGVVVTGVDP EGPAADRGLR SGDVILDVGG
KPVANSGDVR DALKQASEHG KKTVLMRVKT ADSAARFVAV PIAKG
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