Gene RPB_0900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0900 
Symbol 
ID3909080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp1036991 
End bp1037617 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content65% 
IMG OID637882793 
ProductOmpA/MotB 
Protein accessionYP_484522 
Protein GI86748026 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGATTC GGCAGATCAA ATTCAGCCTG GCGCTGGCCG CCGTCGTTCT GGTGGGCGGC 
TCTGGTATCA GCATGACCGC GGCGGAGGCC GGCGAGGTGT CCTCGCAGCA GATTCGCGAT
CAGCTCAAGA CCTCCAAGAC CCGCAGCCTG AGCGGAACCC GCGCCGCAAT GAGTCCGGAC
GATCTGGCGA CGATCAAGCG GGTCAGCCGG ACCCGGTCGC TGTCGGCCGG CGACCGCGAG
CAGATCGCAG CGATTGCCGC CAAGCGCCCG ACGATCGATC TCGAGATCAA TTTCGACTAC
AACTCCGCGA CCTTGTCGCC GCGGGCCGAA CCGCAATTGA AGAGCCTCGG CGACGCCCTG
ACCAGCAGCG ACCTGAAGAA TTCGATCGTC ATGCTGGCCG GCCATACCGA CGCCAAAGGC
GGCGACGATT ACAATCAGAG CCTGTCGGAA CGGCGGGCCG AGGCCGTCAA GCGCTACCTG
ATCGAGCGCT ATCGGATCCA GCCGGACAAT CTGGTCGCCG TCGGCTACGG CGAGAAGCAG
CTCAAGAGCT CGGCCGAGCC GCTCGCCGCG GAGAACCGCC GCGTCCAGAT CGTCAACATG
GCCGAGCACG ACGAGGCGGC GAAGTAA
 
Protein sequence
MMIRQIKFSL ALAAVVLVGG SGISMTAAEA GEVSSQQIRD QLKTSKTRSL SGTRAAMSPD 
DLATIKRVSR TRSLSAGDRE QIAAIAAKRP TIDLEINFDY NSATLSPRAE PQLKSLGDAL
TSSDLKNSIV MLAGHTDAKG GDDYNQSLSE RRAEAVKRYL IERYRIQPDN LVAVGYGEKQ
LKSSAEPLAA ENRRVQIVNM AEHDEAAK