| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0890 |
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| Symbol | |
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| ID | 3909070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 1020195 |
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| End bp | 1021115 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882783 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_484512 |
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| Protein GI | 86748016 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.459513 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTTG GGATCGCGAA CGGCCCTGCC CGCGACATTC TCCAGCGCGG CGTGAGCGCT
CTGCTGATCG CAACACTGTG CGCGACCGCG CTGCCGGCGC GCGCCGCCGA CGAGGCGGAG
CCCAATGCGG TCAAGGGCCA GGCGGTGACG GTGCTGAAGG CGGCCAAATC CTGCTTTCCG
GCGATCGTCG AAGTCTCCGG CTTCCTGATC CCACGCGACG AAATCTCGAT CCGCCCCGAC
CGCCCCGGCG CGCGGGTCAC TGAGGTGATG GCCGACGCCG GCGAAATCGT CGCGCAGGGC
CAGGCGTTGG CGAAACTCGC CGGGCCCGAC AGCGGATCGA CGATCTCCGC GCCGGTCGCG
GGCCTCGTCT CCAGCTCCAC CGCGGTGATC GGATCGCCGG CCTCGGCGAA GGGCGAAGCG
TTGTACACCA TCATCGCGCG CAGCGAATTC GATCTGGTCG GCCAGGTGCC GACGCGCAAT
CTCGCGCAGC TCGCGGTCAA CCAGACCGCC GCGGTCAAGA TCGTCGGGGT GCCCGACGAG
ATCGAAGGCC GGGTGCGGCG CGTGTCGTCG ACGGTGGAGC CCAACAGCCA GCTCGCCAGC
GTGTTCGTCG GCGTCAGCTC GACCAAGCGG CTGTTGTCCA ACGCCTCGGG CCGCGCGATG
ATCAAGACCG GCGAAAGCTG CGGCATCTCG GTGCCGCTGA CGGCCGTGCT CTACAGCTCG
GCCGGCACAG TCGTGCAGGT GGTGCGGCGC CAGACGGTCG AGACCAAGCG CGTCGAGGTC
GGGCTGATGA ACGGCGGCAA TGTCGAGATC CGCGAAGGCC TGCAGGAAGG CGACATCATC
GTCGCCCGTG CCGGCGCGTT GCTGCGCGAA GGCGACCCGG TGCGCCCGGT GGTCGCCGAC
GCGAAGCCGG CCGAGAAGTA A
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| Protein sequence | MNFGIANGPA RDILQRGVSA LLIATLCATA LPARAADEAE PNAVKGQAVT VLKAAKSCFP
AIVEVSGFLI PRDEISIRPD RPGARVTEVM ADAGEIVAQG QALAKLAGPD SGSTISAPVA
GLVSSSTAVI GSPASAKGEA LYTIIARSEF DLVGQVPTRN LAQLAVNQTA AVKIVGVPDE
IEGRVRRVSS TVEPNSQLAS VFVGVSSTKR LLSNASGRAM IKTGESCGIS VPLTAVLYSS
AGTVVQVVRR QTVETKRVEV GLMNGGNVEI REGLQEGDII VARAGALLRE GDPVRPVVAD
AKPAEK
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