| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0359 |
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| Symbol | dapF |
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| ID | 3908625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 401137 |
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| End bp | 402018 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637882245 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_483981 |
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| Protein GI | 86747485 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.281765 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGC TGGACAATCG CCTTTTCGCC AAGATGAACG GCATCGGCAA CGAGATCGTC
GTGGTCGATC TGCGCGACCA GCCCGCGCCG GTGACGCCGG ACGATGCCCG CGCGGTGGCG
GCGCATGTGC CTTATGATCA ACTGATGTTG CTGCAGCCGG CGCGGCTGCC CGGCACCGAA
GCCTTCGTCC GGATCTACAA CAATGACGGC TCCGAATCCG GCGCTTGTGG CAACGGCATG
CGCTGCGTCG CGCGGCAGCT GTTCGCCGGC TCCGACCAGC AGGGCCTGAC CTTCGAGACC
CGCGCCGGCC TGCTCAATTG CTGGCGCGGC CCCGCCGAGG GCCTGTTCAC CGTCGACATG
GGCGCGCCGA AATTCGGCTG GCAGGACATT CCGCTCGCCG AGGAATTCCG CGACACCCGC
GGCATCGAAC TGCAGATCGG CCCGATCGAC GCGCCGATCC TGCACACGCC CTCGGTGGTC
AGCATGGGCA ATCCGCATGC GATCTTCTGG GTCGACGACA TCCACGCCTA CGATCTCGGC
CAATTCGGAC CGCTGCTGGA GAATCACCCG ATCTTTCCGG AGCGCGCCAA TATCACGCTC
GCCCATATCG TCGATCGCCA GCACATCACG ATGCGGACCT GGGAGCGCGG CGCCGGGCTG
ACCCGCGCCT GCGGCTCGGC CGCCTGCGCC ACCGCGGTCG CCGCCGCGCG GCTGCGGCGG
ACCGACCGAA TCGTCGAGAT GACGCTGCCG GGCGGCAAGC TCACGATCGA ATGGCGCGAG
GGCGACGATC ACGTGCTGAT GACCGGCGGC GCCGAGCTCG AATTCGAGGG CCGGTTCGAT
CCGGCGCTGT TCGTCGGCGC GTGTGACACG ACCGCCGCCT GA
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| Protein sequence | MSALDNRLFA KMNGIGNEIV VVDLRDQPAP VTPDDARAVA AHVPYDQLML LQPARLPGTE
AFVRIYNNDG SESGACGNGM RCVARQLFAG SDQQGLTFET RAGLLNCWRG PAEGLFTVDM
GAPKFGWQDI PLAEEFRDTR GIELQIGPID APILHTPSVV SMGNPHAIFW VDDIHAYDLG
QFGPLLENHP IFPERANITL AHIVDRQHIT MRTWERGAGL TRACGSAACA TAVAAARLRR
TDRIVEMTLP GGKLTIEWRE GDDHVLMTGG AELEFEGRFD PALFVGACDT TAA
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